PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000129.1_g170.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 969aa MW: 107120 Da PI: 5.3389

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000129.1_g170.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	607	627	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Pav_sc0000129.1_g170.1.mk 607 PCNNFKENGFCSRGDRCMFSH 627 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence
MEEANIETGK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELDQ 60 DNGSIEPVQA TEKEVLENVE LVGPGSLGPK NSAAEEVRVP DESCNPNDFQ EQLEQIESIL 120 NVAENEDFSK LNEVMDIENI LAIDFQDMDF NPEQILMDEP ERMAKGNEDD THRPSATSLD 180 QNQSGSDKVA LLTNQEEHDA TVIYESSVQM VSGTLDSSLH TVAVGESSNQ RESNEQNSFL 240 MTNRLDVEPI MQQKAMELET YVSSEGAKES FIPITEVGAI KEPENFSQKV PDSFDFSLNK 300 DMVAEASKPT EYSKDKSSSR VNNDLEVEHE MQQKDKELEE IVCTRTAISS PSHMSEDIEE 360 GEISSDDGMD DRSNDVLLHD TVVLEEKKVP EVQIFKDVLD RKVHSCTVAN DKDFGFNSFL 420 VDMVDEGKFD RGAELIESSR TEMIPRLGVV EGKNVKALKV DDSNPLLEGG RIEMQDNGVR 480 VGIGCPEAGH HGITSEEKWD DGACNKRKRG PPTKEKKEKK KAKERKKRAE KNRELGVKRL 540 KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD 600 HELSKYPCNN FKENGFCSRG DRCMFSHTMP SNEDSATAAC KPELKPPMVL NNSRSQQANT 660 GGASQQNVHA SAYSMGIHSR NNTRQNVTQT VLKQPELANK GISFPSIPKS SLVHSSMSKQ 720 EGLAPDRNTG AKAGNQIDQS PFSSVQNSTV ILKRTPPVTA PRGINFLSFG KASPDDARGK 780 NQVSSQTSPS VSETVKNLNG MLKANQSAAP QGTHFNPFGK SSVASSSSEK PVSLPSFWNN 840 GSKIDSCESQ NTADKPQNSS EISLRLPPSP LTSGQSSDHI ASRFCKDTAN SFQRGLFSTL 900 AFAAKYKTQN MNQSFGSIGA QVDKETRNNN VSDRVEIHPP SSAAGIDLRL VESYAHLYPL 960 LLPIEKFDN

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence

MEEANIETGK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELDQ  60
DNGSIEPVQA TEKEVLENVE LVGPGSLGPK NSAAEEVRVP DESCNPNDFQ EQLEQIESIL  120
NVAENEDFSK LNEVMDIENI LAIDFQDMDF NPEQILMDEP ERMAKGNEDD THRPSATSLD  180
QNQSGSDKVA LLTNQEEHDA TVIYESSVQM VSGTLDSSLH TVAVGESSNQ RESNEQNSFL  240
MTNRLDVEPI MQQKAMELET YVSSEGAKES FIPITEVGAI KEPENFSQKV PDSFDFSLNK  300
DMVAEASKPT EYSKDKSSSR VNNDLEVEHE MQQKDKELEE IVCTRTAISS PSHMSEDIEE  360
GEISSDDGMD DRSNDVLLHD TVVLEEKKVP EVQIFKDVLD RKVHSCTVAN DKDFGFNSFL  420
VDMVDEGKFD RGAELIESSR TEMIPRLGVV EGKNVKALKV DDSNPLLEGG RIEMQDNGVR  480
VGIGCPEAGH HGITSEEKWD DGACNKRKRG PPTKEKKEKK KAKERKKRAE KNRELGVKRL  540
KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD  600
HELSKYPCNN FKENGFCSRG DRCMFSHTMP SNEDSATAAC KPELKPPMVL NNSRSQQANT  660
GGASQQNVHA SAYSMGIHSR NNTRQNVTQT VLKQPELANK GISFPSIPKS SLVHSSMSKQ  720
EGLAPDRNTG AKAGNQIDQS PFSSVQNSTV ILKRTPPVTA PRGINFLSFG KASPDDARGK  780
NQVSSQTSPS VSETVKNLNG MLKANQSAAP QGTHFNPFGK SSVASSSSEK PVSLPSFWNN  840
GSKIDSCESQ NTADKPQNSS EISLRLPPSP LTSGQSSDHI ASRFCKDTAN SFQRGLFSTL  900
AFAAKYKTQN MNQSFGSIGA QVDKETRNNN VSDRVEIHPP SSAAGIDLRL VESYAHLYPL  960
LLPIEKFDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	506	528	KRKRGPPTKEKKEKKKAKERKKR
2	506	531	KRKRGPPTKEKKEKKKAKERKKRAEK
3	507	529	KRKRGPPTKEKKEKKKAKERKKR