PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000129.1_g050.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17442.7 Da PI: 6.5018 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.9 | 5.1e-36 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCa+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ Pav_sc0000129.1_g050.1.br 13 ACASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVHGCLGIIRGLN 96 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 q++ l+ el+ +k++ Pav_sc0000129.1_g050.1.br 97 AQIQGLERELHIMKQH 112 ***********99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MENRDQGAAQ NHACASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM 60 AAPDQRQAAA ESILTEGNAR KNDPVHGCLG IIRGLNAQIQ GLERELHIMK QHLELCKEKE 120 ELDGKINQSK QEDLQHDQSD GLNFPSQILP DLARL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-30 | LBD family protein |