PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000119.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 227aa    MW: 25774.2 Da    PI: 5.7416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000119.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.0003465120454
                                HHHHHHHHHHHHHHHHH.HHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsaf.eeLrellPkas....kapskKlsKaeiLekAveYIksL 54 
                                a+  rE+ RR+r+N++  ++L  l  ++s     ++ +K +K +iL  A++ + +L
  Pav_sc0000119.1_g110.1.mk  65 AKACREKLRRERLNDRHaSNLIFLFVELSavlePGRPPKSDKPAILDDAIRVLTQL 120
                                5778***********965666666666556666668999***********999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEEWIEYLDY IDETTQPSDF LWPNDTPSFR EFEFSAVDVP AAFSPEKECP RKRGRTDSSC  60
SGSGAKACRE KLRRERLNDR HASNLIFLFV ELSAVLEPGR PPKSDKPAIL DDAIRVLTQL  120
RAEAQELKET NEKLLEEVKS LKAEKNELRE EKLVLKADKE RLEQQLKGIA ISPSGFVPTH  180
PAVPAAYHPG ASKMAMYPSY SLVPMWHYLP PSVRDTSRDH ELRPPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056PRKRGRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.22e-70bHLH family protein