PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000107.1_g550.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 180aa    MW: 19418.8 Da    PI: 5.0107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000107.1_g550.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-151058154
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                               s+y+G+r  ++ g+Wv+eIr+p++   ++r++lg+f tae+Aa+a++ a+++l+
  Pav_sc0000107.1_g550.1.mk 10 SRYHGIR--SRGGKWVSEIREPRK---TTRIWLGTFPTAEMAAAAYDVAALALK 58
                               7899**5..679*********843...5**********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MASSPSRKQS RYHGIRSRGG KWVSEIREPR KTTRIWLGTF PTAEMAAAAY DVAALALKRG  60
DAVLNFPSSL DSYPVPASTS PQDIRSAAAA AAAAAALQGN EEPDNSLKLI EKKTKYEYDM  120
MMMSSTSLAS SVGMDEEELF GMPNLLANMA EGMLVSPPRP SDYPDSSANS DGADSRLWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-28ERF family protein