PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000107.1_g240.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 383aa MW: 42777 Da PI: 9.1246

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000107.1_g240.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	202	248	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ Pav_sc0000107.1_g240.1.mk 202 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 248 799*********************6.....5***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
RLVDHGDVTG SEWFYFYSVS LTQSFAAGHA TNNILGRAFC SGGFVWLAGA HELQFYECER 60 VKEARRHGIQ TLVCIATPYG VLELASLDVI KEDWGLVHLS KSLFRSDNSN NNRVSQQQGS 120 RQGNVLAPLL EKGIFSGSQK ELARQAAAGT KEAAPITIGG SSPESLSGSV GNFTCENTEN 180 TRSKKRRRSS NNGASRESSL LNHVEAERQR REKLNHRFYL LRSVVPNVSK MDRSSLLADA 240 VAYINQLKAK VEELELKTQA QPQNTERVSV NNLDNQCSQS TSSIVDHHNH HHHSSYNNRT 300 VVPVEVEVKI RGSEAIIRVQ CPDQDYPYAR LMNALKGLGL QVYHASISSV KELMIQDVVA 360 RVPYGFNSDQ EAMRTAIMKR WHR

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

RLVDHGDVTG SEWFYFYSVS LTQSFAAGHA TNNILGRAFC SGGFVWLAGA HELQFYECER  60
VKEARRHGIQ TLVCIATPYG VLELASLDVI KEDWGLVHLS KSLFRSDNSN NNRVSQQQGS  120
RQGNVLAPLL EKGIFSGSQK ELARQAAAGT KEAAPITIGG SSPESLSGSV GNFTCENTEN  180
TRSKKRRRSS NNGASRESSL LNHVEAERQR REKLNHRFYL LRSVVPNVSK MDRSSLLADA  240
VAYINQLKAK VEELELKTQA QPQNTERVSV NNLDNQCSQS TSSIVDHHNH HHHSSYNNRT  300
VVPVEVEVKI RGSEAIIRVQ CPDQDYPYAR LMNALKGLGL QVYHASISSV KELMIQDVVA  360
RVPYGFNSDQ EAMRTAIMKR WHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	6e-47	bHLH family protein