PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000103.1_g970.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-X1

Protein Properties

Length: 1183aa MW: 128813 Da PI: 8.1806

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000103.1_g970.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.4	4.7e-06	373	389	3	19
zf-NF-X1 3 kHkCqklCHeGpCppCp 19 +H+C+++CH GpC+pC+ Pav_sc0000103.1_g970.1.mk 373 RHRCERTCHVGPCDPCQ 389 8***************6 PP
2	zf-NF-X1	19.8	1.7e-06	435	452	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+GpC++C Pav_sc0000103.1_g970.1.mk 435 CGNHACGEVCHPGPCGEC 452 ****************** PP
3	zf-NF-X1	17.7	7.9e-06	487	510	1	18
zf-NF-X1 1 CG......kHkCqklCHeGpCppC 18 CG +H+Cq+ CH+G+CppC Pav_sc0000103.1_g970.1.mk 487 CGkslpceMHQCQEVCHTGDCPPC 510 778888889*************** PP
4	zf-NF-X1	17.2	1.1e-05	589	606	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC Pav_sc0000103.1_g970.1.mk 589 CGQHSCESLCHSGHCPPC 606 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1183 aa Download sequence
MKKRPGPVRR IGWWDWRHSG VATTQILGED FIQMAVNESY CKLLCLSIPL VFVWVRSAYF 60 GTLSENRRLE GSLVSQNMSS QVRNERRDRS RFPAQPPQSA QPARREWVPR GSNPTTAAVN 120 PPPSFNSNIP NGNAGQPNYS SAPSESRQQQ RGNNASRGHM GRPMNHGRER GRSENQEEVR 180 LKDSNLPQLV QEIQDKLTKG TVECMICYDM VRRSAPVWSC SSCYSIFHLN CIKKWARAPT 240 SIDMSAGKNQ GFNWRCPGCQ YVQLTSSKEI RYVCFCGKRT DPPSDLYLTP HSCGEPCGKQ 300 LEKDVPGRGV SKDDLCPHVC VLQCHPGPCP PCKAFAPPRL CPCGKKVITT RCSDRTSVLT 360 CGQHCNKLLD CLRHRCERTC HVGPCDPCQV LVDASCFCKK KVEVVLCGDM TVKGEVKAED 420 GVFSCSSTCG KKLSCGNHAC GEVCHPGPCG ECNLMPTKIK TCHCGKTSLQ GERQSCLDPV 480 PTCSQICGKS LPCEMHQCQE VCHTGDCPPC LVKVSQKCRC GSTSRTVECF KTTMEIEKFT 540 CDKPCGRKKN CGRHRCSERC CPLSNSNNVL SGDWDPHFCS MPCGKKLRCG QHSCESLCHS 600 GHCPPCLDTI FTDLTCACGR TSIPPPLPCG TPPPSCQLPC SVPQPCGHSS SHSCHFGECP 660 PCSVPVAKEC IGGHVVLRNI PCGSRDIKCN KLCGKTRQCG MHACGRTCHP PPCDTSSSVE 720 PGTKTSCGQT CGAPRRDCRH TCTALCHPYA PCPDNRCDFP VTITCSCGRI TANVPCDSGG 780 SSASFKADTV YEASIIQRLP APLQPIESTS KKIPLGQRKF MCDDECAKLE RKRVLADAFD 840 IASPNLDALH FGENSAVSEL LSDLFRRDAK WVLSVEERCK YLVLGKSRGP TSGLRVHVFC 900 PMLKEKRDVV RMIAERWKLA VQSAGWEPKR FIVVHVTPKS KTPARVIGVK GTTTVNAPQP 960 PAFDHLVDMD PRLVVSFPDL PRDADISALV LRFGGECELV WLNDKNALAV FNDPARAATA 1020 MRRLDNGTLY HGAINILSNG SASVASSGSN AWAGLGTAKE GGVSTALRGN PWKKAVIREP 1080 GWREDSWGDV EWAGGSVDVQ ASVWKKEAPI TASLNRWSVL DGDVALGSSS VSPSIEDTGK 1140 QSLSGLNPAL ESNASGSISA GQQHGGNIAD TSEVVDDWEK AYE

Sequence ? help Back to Top

Protein Sequence Length: 1183 aa Download sequence

MKKRPGPVRR IGWWDWRHSG VATTQILGED FIQMAVNESY CKLLCLSIPL VFVWVRSAYF  60
GTLSENRRLE GSLVSQNMSS QVRNERRDRS RFPAQPPQSA QPARREWVPR GSNPTTAAVN  120
PPPSFNSNIP NGNAGQPNYS SAPSESRQQQ RGNNASRGHM GRPMNHGRER GRSENQEEVR  180
LKDSNLPQLV QEIQDKLTKG TVECMICYDM VRRSAPVWSC SSCYSIFHLN CIKKWARAPT  240
SIDMSAGKNQ GFNWRCPGCQ YVQLTSSKEI RYVCFCGKRT DPPSDLYLTP HSCGEPCGKQ  300
LEKDVPGRGV SKDDLCPHVC VLQCHPGPCP PCKAFAPPRL CPCGKKVITT RCSDRTSVLT  360
CGQHCNKLLD CLRHRCERTC HVGPCDPCQV LVDASCFCKK KVEVVLCGDM TVKGEVKAED  420
GVFSCSSTCG KKLSCGNHAC GEVCHPGPCG ECNLMPTKIK TCHCGKTSLQ GERQSCLDPV  480
PTCSQICGKS LPCEMHQCQE VCHTGDCPPC LVKVSQKCRC GSTSRTVECF KTTMEIEKFT  540
CDKPCGRKKN CGRHRCSERC CPLSNSNNVL SGDWDPHFCS MPCGKKLRCG QHSCESLCHS  600
GHCPPCLDTI FTDLTCACGR TSIPPPLPCG TPPPSCQLPC SVPQPCGHSS SHSCHFGECP  660
PCSVPVAKEC IGGHVVLRNI PCGSRDIKCN KLCGKTRQCG MHACGRTCHP PPCDTSSSVE  720
PGTKTSCGQT CGAPRRDCRH TCTALCHPYA PCPDNRCDFP VTITCSCGRI TANVPCDSGG  780
SSASFKADTV YEASIIQRLP APLQPIESTS KKIPLGQRKF MCDDECAKLE RKRVLADAFD  840
IASPNLDALH FGENSAVSEL LSDLFRRDAK WVLSVEERCK YLVLGKSRGP TSGLRVHVFC  900
PMLKEKRDVV RMIAERWKLA VQSAGWEPKR FIVVHVTPKS KTPARVIGVK GTTTVNAPQP  960
PAFDHLVDMD PRLVVSFPDL PRDADISALV LRFGGECELV WLNDKNALAV FNDPARAATA  1020
MRRLDNGTLY HGAINILSNG SASVASSGSN AWAGLGTAKE GGVSTALRGN PWKKAVIREP  1080
GWREDSWGDV EWAGGSVDVQ ASVWKKEAPI TASLNRWSVL DGDVALGSSS VSPSIEDTGK  1140
QSLSGLNPAL ESNASGSISA GQQHGGNIAD TSEVVDDWEK AYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein