PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000103.1_g1350.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 259aa    MW: 29987.5 Da    PI: 7.96
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000103.1_g1350.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-18449147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  Pav_sc0000103.1_g1350.1.mk  4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                                899*****************************.***********996 PP
2Myb_DNA-binding54.72.3e-175699146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                r+++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Pav_sc0000103.1_g1350.1.mk 56 RNPFTEEEEERLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                                789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MCTRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRNPFT  60
EEEEERLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSR LHAKLIRTSS  120
TTSTAVPQSS LTTSNINIDI PKSSSKQDHP QINCDITRNL DAYTYFGKFY PAFTHNPPPP  180
PFPREFYYPN TCVTMHQDHK DQPIEFYDFL QVNTESNGSE VIDNARKDEE EVDQEAVGQQ  240
ISKAAGAPFI EFLSVNGNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.19e-90MYB family protein