PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000103.1_g1240.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 508aa MW: 56888.7 Da PI: 8.6652

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000103.1_g1240.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6.1e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Pav_sc0000103.1_g1240.1.mk 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	15.2	6.1e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Pav_sc0000103.1_g1240.1.mk 132 WVCDKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRVRSESQ ALQPAACLSR TASSPSPSCS DNNFSRAPPN WPPPSNLVLP HPNPTEYTKL 240 ILTSTSPPAH PDHLQPSLVS KKALYNLDLQ LATTSNNIPI NEVSSVSSKR EENHSTQLQL 300 SIGSCDFGGG ELHQNKIVEH SNFMITNRNY SPRDKEMRER ESSSTTTNNH EHDDDQKPKP 360 SAGISISAAS SRLKEEAREQ LRLAMAEKAY AEEARRQAEH QIELAEKEFA NAKRIRQQAQ 420 AELDKAQALK EQAIKKVNST ILQITCHACK QQFIQADHPT TRSRATPTPT HEAINHSLVL 480 SYMSSAITSE GDPLDNNNIR PNHAKPAN

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRVRSESQ ALQPAACLSR TASSPSPSCS DNNFSRAPPN WPPPSNLVLP HPNPTEYTKL  240
ILTSTSPPAH PDHLQPSLVS KKALYNLDLQ LATTSNNIPI NEVSSVSSKR EENHSTQLQL  300
SIGSCDFGGG ELHQNKIVEH SNFMITNRNY SPRDKEMRER ESSSTTTNNH EHDDDQKPKP  360
SAGISISAAS SRLKEEAREQ LRLAMAEKAY AEEARRQAEH QIELAEKEFA NAKRIRQQAQ  420
AELDKAQALK EQAIKKVNST ILQITCHACK QQFIQADHPT TRSRATPTPT HEAINHSLVL  480
SYMSSAITSE GDPLDNNNIR PNHAKPAN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-118	C2H2 family protein