PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000103.1_g1160.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 473aa MW: 52521.9 Da PI: 7.815

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000103.1_g1160.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.8e-32	317	370	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pav_sc0000103.1_g1160.1.mk 317 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 370 9****************************************************7 PP
2	Myb_DNA-binding	48.4	2.1e-15	318	369	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ Pav_sc0000103.1_g1160.1.mk 318 RMRWTTSLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 369 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MPHEKGISEA AGSCRLSLNP IPDLSLHISP PNANTNTNAN SAPSSICTDH RTNEAPNHHE 60 SGSCFDIWRR DMEGDGLINK SHSDSCVRRG SRSLVAAADH DTELSLANPT ASEAESRWRK 120 NYFNTRGGGG EGRRHHLHHH EEEEEAKTSI SHGFSMLDVA ERLKPIKGIP VYNCPPTNCS 180 FPPNLEDQSH YSRVDRDQRD DFDSNKLRLY LSNSLRPAAP AANSCSGMGM GMGFESAMSR 240 TFNGMTMDSL SQRQHYFPSY NLNHLQQRQC SVGGVNGGAN YSYNYNSDLP SNGFIMRSRL 300 TPTKLSQNIN KRNMRAPRMR WTTSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH 360 VKSHLQMYRT VKNTDKPLGS SDGSGDEDLL STTTTHHHNS SALLNQRGAS NLEQDMQHHH 420 HHHHHPSSNN LWGNSSSRGA WLQAGSMGRN GLRPELVSHH TITSGNQFEV VTT

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MPHEKGISEA AGSCRLSLNP IPDLSLHISP PNANTNTNAN SAPSSICTDH RTNEAPNHHE  60
SGSCFDIWRR DMEGDGLINK SHSDSCVRRG SRSLVAAADH DTELSLANPT ASEAESRWRK  120
NYFNTRGGGG EGRRHHLHHH EEEEEAKTSI SHGFSMLDVA ERLKPIKGIP VYNCPPTNCS  180
FPPNLEDQSH YSRVDRDQRD DFDSNKLRLY LSNSLRPAAP AANSCSGMGM GMGFESAMSR  240
TFNGMTMDSL SQRQHYFPSY NLNHLQQRQC SVGGVNGGAN YSYNYNSDLP SNGFIMRSRL  300
TPTKLSQNIN KRNMRAPRMR WTTSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH  360
VKSHLQMYRT VKNTDKPLGS SDGSGDEDLL STTTTHHHNS SALLNQRGAS NLEQDMQHHH  420
HHHHHPSSNN LWGNSSSRGA WLQAGSMGRN GLRPELVSHH TITSGNQFEV VTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	4e-37	G2-like family protein