PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000100.1_g350.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 551aa MW: 61718.6 Da PI: 5.8289

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000100.1_g350.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	71.9	1.3e-22	16	176	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........... 74 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF++ + ++ e+++ s Pav_sc0000100.1_g350.1.mk 16 FLLKTYDMVDDSATDEIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIQHF-----HHATRLESRKGStcrldydaslc 94 9**************************************************965.....444444444333467999* PP .......................................................XTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .......................................................kekiweFkhksFkkgkkellekikrkk 101 +++ weF+++ F +++k+ll++i+r+k Pav_sc0000100.1_g350.1.mk 95 mvmmvshwileeratvelsgmcqqnvqtglghsvvsypryptskdetrfqgfrkiDPEKWEFANEDFIQDQKHLLKNIHRRK 176 **********************************9999999888877765449*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFVVWNPPEF ARLLLPTYFK 60 HNNFSSFIQH FHHATRLESR KGSTCRLDYD ASLCMVMMVS HWILEERATV ELSGMCQQNV 120 QTGLGHSVVS YPRYPTSKDE TRFQGFRKID PEKWEFANED FIQDQKHLLK NIHRRKPIHS 180 HSNPQGSMVD PERAALDDEI EKLSHDKATL EANISRFKQQ RSDAKLQLED LTQRVNSMEQ 240 RQKDLLKFLD KNVQNPTFVE HLTRKIEAMD FAACNKKRRL PDVDHLQPVV ENSFVDNQSS 300 SRSEFGNIFH QDFSSKLRLE LSPAVSDINL VSRSTQSSNE DGYSPTRKIS EELKGVQKRT 360 EGLLFAPETL ELSDTGTSFA FKMDSLLTRK APTVGNPRLH SLQPGLSSNE EGDGHISCQL 420 KLTLASSPLQ VNSSPHSATI PLVGQDISKS LASGLNANGK ESDIRAFTNK NPADEDMPIT 480 CSQEDTNNNQ GPPPAPVNDV FWEQFLTERP GCSENEEASS NYRGNPYDEQ DDGRLGHGMS 540 RSAKDAETLT L

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFVVWNPPEF ARLLLPTYFK  60
HNNFSSFIQH FHHATRLESR KGSTCRLDYD ASLCMVMMVS HWILEERATV ELSGMCQQNV  120
QTGLGHSVVS YPRYPTSKDE TRFQGFRKID PEKWEFANED FIQDQKHLLK NIHRRKPIHS  180
HSNPQGSMVD PERAALDDEI EKLSHDKATL EANISRFKQQ RSDAKLQLED LTQRVNSMEQ  240
RQKDLLKFLD KNVQNPTFVE HLTRKIEAMD FAACNKKRRL PDVDHLQPVV ENSFVDNQSS  300
SRSEFGNIFH QDFSSKLRLE LSPAVSDINL VSRSTQSSNE DGYSPTRKIS EELKGVQKRT  360
EGLLFAPETL ELSDTGTSFA FKMDSLLTRK APTVGNPRLH SLQPGLSSNE EGDGHISCQL  420
KLTLASSPLQ VNSSPHSATI PLVGQDISKS LASGLNANGK ESDIRAFTNK NPADEDMPIT  480
CSQEDTNNNQ GPPPAPVNDV FWEQFLTERP GCSENEEASS NYRGNPYDEQ DDGRLGHGMS  540
RSAKDAETLT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-127	HSF family protein