PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000094.1_g470.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 500aa MW: 55116.5 Da PI: 8.9976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000094.1_g470.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pav_sc0000094.1_g470.1.mk 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.9	0.00067	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Pav_sc0000094.1_g470.1.mk 143 WKCEKCSKKYAVQSDWKAHSKVC 165 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MMSEDGLSIP STIKGLAQEL SSSPNPNPNA DNQLKRKRNL PGTPGKYPDA EVIALSPKSL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PERTCVHHEP 120 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKVCGTREY RCDCGTLFSR 180 KDSFITHRAF CDALAAEESA RFGSASTTNM NPSFINGCNN ITNINPHHQT PRIPHFIPMF 240 QQEFAGSDPA AANNSHLNSN AFMPELVPTA SMDMFGSSSS SQTQWLINNN KFPEEASFNL 300 SMSSSSLARG LKEELEESKG SLSETISASA TSFYNNNNHQ HQPMSATALL QKAAQMGSTR 360 SNNNNNPATT FNDTAFGFMS TSSNSSNMSN QLSSYGHHHN KNEVESFNDL VNSMSSSTPA 420 TTIRDGSLFS SSFLSNKHLM MNMPGAANLI KQSQSEQSSL TRDFLGVGGD AISGVPFFQQ 480 ELAKLASMGD LSQYTSSGHQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MMSEDGLSIP STIKGLAQEL SSSPNPNPNA DNQLKRKRNL PGTPGKYPDA EVIALSPKSL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PERTCVHHEP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKVCGTREY RCDCGTLFSR  180
KDSFITHRAF CDALAAEESA RFGSASTTNM NPSFINGCNN ITNINPHHQT PRIPHFIPMF  240
QQEFAGSDPA AANNSHLNSN AFMPELVPTA SMDMFGSSSS SQTQWLINNN KFPEEASFNL  300
SMSSSSLARG LKEELEESKG SLSETISASA TSFYNNNNHQ HQPMSATALL QKAAQMGSTR  360
SNNNNNPATT FNDTAFGFMS TSSNSSNMSN QLSSYGHHHN KNEVESFNDL VNSMSSSTPA  420
TTIRDGSLFS SSFLSNKHLM MNMPGAANLI KQSQSEQSSL TRDFLGVGGD AISGVPFFQQ  480
ELAKLASMGD LSQYTSSGHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	106	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-99	C2H2 family protein