PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000094.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 895aa    MW: 98608.6 Da    PI: 6.6089
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000094.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-182683457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Pav_sc0000094.1_g040.1.mk 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 83
                               5789****************************************************97 PP
2START161.56.1e-511623692204
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+    
  Pav_sc0000094.1_g040.1.mk 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMF 244
                                7899******************************************************.7777777777***********9999 PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                  g  g+++l++++++a+s+l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s 
  Pav_sc0000094.1_g040.1.mk 245 PAGngGTIELIYTQTYAPSTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasAAQFVRAEMLPSGYLIRPCEGGGSI 328
                                99999********************************************999999989999*********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                +++v+h +l++++++++lr+l++s+ + +++++ a+l++ +
  Pav_sc0000094.1_g040.1.mk 329 IHIVDHLNLEAWSVPEVLRPLYESSKVVAQRMTIAALRYIR 369
                                ************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    
MAMAVAHHRE SSSGSSINKH LDAGKYVRYT SEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPRQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TAPTTDASCD SVVTTPQHSL RDANNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS QSCSGVAARA CGLVSLEPTK IAEILKDRPS WFRDCRSLEV  240
FTMFPAGNGG TIELIYTQTY APSTLAPARD FWTLRYTTSL DNGSFVVCER SLSGSGAGPN  300
AASAAQFVRA EMLPSGYLIR PCEGGGSIIH IVDHLNLEAW SVPEVLRPLY ESSKVVAQRM  360
TIAALRYIRQ IAQETSGEVV YSLGRQPAVL RTFSQRLIRG FNDAVNGFND DGWSLINCDG  420
AEDVIIAVNS TKNLTTSNPA NSLALLGGGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD  480
FNVDAYAAAS LKAGSYAYPG MRPTRFTGGQ IIMPLGHTIE HEELLEVVRL EGHSLTQEDA  540
FASRDIHLLQ ICSGVDENAV GACSELVFAP IDEMFPDDAP LVPSGFRIIP LDSKTVEFYR  600
ALPSDSKDTL ATHRTLDLTS SLEVGSTTNN AAGELSSFHN TRSVLTIAFQ FPFESSLQEN  660
VATMARQYVR SVISSVQRVA MAISPSGLSP SVGPKLSPGS PEALTLAHWI CQSYRQVLFE  720
SLRLHVQSAS LIRYLIFFSV SYTCLYTQVI YVSILFFYPF SYHVGAELLR PDSLGGDSML  780
KHLWHHQDAI LCCSLKSLPV FIFANQAGLD MLETTLVALQ DISLDKIFDE CGRKTLCADF  840
AKLMNQGFAH LPAGICMSTM GRHVSYEQAV AWKVLAAEEN SVHCLAFSFM NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein