PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000093.1_g660.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 430aa MW: 47423 Da PI: 5.9115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000093.1_g660.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.7e-10	242	289	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Pav_sc0000093.1_g660.1.mk 242 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 289 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MNRALPEMLN CMNAPGTFLA GNCTDMTVLE RQRARMKWHQ HEHNDPIQLH QQQQGYNFSG 60 NELNGGQAQG FIGLVCGDSE VKPDPCSENR WAELGYGSCG LVVNNNGAAG FEEMINGHNN 120 NSNISRTFSC PPTVAAEKKS NDAVLSQKIN SPAGKESFKK RKADKVQSSK AVAAEDDSTE 180 KRMKGCAEEG DSKITEQTST KNNTNNDRES SGDTSKDNSK ASEVQKPDYI HVRARRGQAT 240 DSHSLAERVR REKISERMKY LQDLVPGCNK ITGKAGMLDE IINYVQSLQR QVEFLSMKLA 300 AVNPRLDFNI DDLFAKEMFP ACAANFGMSS DMTNSAFVQF NPAQQMVSSC GLDMGINSSD 360 LALRRTISAP VSIPETFLDT SCFTQAPPTA IWDADLQNLF NVEFHQGRTT PFQSQPFTGS 420 IEASNLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MNRALPEMLN CMNAPGTFLA GNCTDMTVLE RQRARMKWHQ HEHNDPIQLH QQQQGYNFSG  60
NELNGGQAQG FIGLVCGDSE VKPDPCSENR WAELGYGSCG LVVNNNGAAG FEEMINGHNN  120
NSNISRTFSC PPTVAAEKKS NDAVLSQKIN SPAGKESFKK RKADKVQSSK AVAAEDDSTE  180
KRMKGCAEEG DSKITEQTST KNNTNNDRES SGDTSKDNSK ASEVQKPDYI HVRARRGQAT  240
DSHSLAERVR REKISERMKY LQDLVPGCNK ITGKAGMLDE IINYVQSLQR QVEFLSMKLA  300
AVNPRLDFNI DDLFAKEMFP ACAANFGMSS DMTNSAFVQF NPAQQMVSSC GLDMGINSSD  360
LALRRTISAP VSIPETFLDT SCFTQAPPTA IWDADLQNLF NVEFHQGRTT PFQSQPFTGS  420
IEASNLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-68	bHLH family protein