PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000084.1_g610.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1445aa MW: 161155 Da PI: 6.7637

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000084.1_g610.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	1416	1442	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg sF+ s++ rH r+ H Pav_sc0000084.1_g610.1.mk 1416 YQCKveGCGLSFRFVSDFSRHRRKtgH 1442 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1445 aa Download sequence
MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRNDGEA RAVFTTRHQE LGQSVKRVKG 120 AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE EMFWKAASEK 180 PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI 240 EVKNASPKNV SDTCLEVSNS STAPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW 300 NLQVIARSPG SLTRFMPDDI PGVTSPMIYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW 360 YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG 420 EFVVTFPRAY HVGFSHGFNC GEAANFGTPH WLEVAKEAAV RRAAMNYLPM LSHQQLLYLL 480 TMSFVSRVPR SLLPGVRGSR MRDRQKEERE LSVKKAFVED MLKENNVLSA LLRKESSYHA 540 VLWNPDLLPY TSKEPQTPSA GHHAFVKGCV TEDPSPVPNV MSPAKDPLIP STTKLNKDWN 600 TVNKFLRPRS FCLEHAVEIV ELLQSKGGAN VLVICHSDYQ KIKAPSAAIA EEIGCSFNYT 660 EVPLDIASKE DLNLIDLAVD DEHDECREDW TSKLGINLRY CVKVRKNSSS KQVQHALTLG 720 GLFSKQSPSS DFQRVKWQSK RSRSKKLNHP AHCRPCGSIE KKDEVVERKA DDTSFKRDEK 780 IIQYSRRNYK LKAGDSTGAG RICGYPATCG EGDKHSRMAS ESNIRDIGNS TSGCARFYSS 840 KSNRMSETYP VVQMLEATKD ISLYSTPSQV AAKLATTTLI AEGVEAQVEN HSSEGRNMYG 900 EGCGLVSRDS SDMQDEIAIP EEASENKSEA QMVNTVMEIS CMNSEVCDSM TLGDEVQQEN 960 QTTNKRNDNA PVSCSSHLLQ DPTFAAAVDY DGCPRETHIA DEFSKDVSLE FKLEEEIKSL 1020 KGRNEEPSLS PTRQINEPSP ASIEGTSGVP RELCAAEDSL PGPISCSEEF RTADRSEGEH 1080 VSTSVTQMEI TQPCISMEES SQVPRGCSSE EGPDNGVTSE TVQQEVQTTN RPIKEPILGL 1140 VIETENQPTS GSVEEFEVLR VTCATDNING FVALDNKEQR KTQTTNSSEE LIYSQDIARC 1200 QPLPASIQTY SRIKREPRAS QGLRNSSEVC LSPLDKELES IGSSIADPAP IPEMGRKRKR 1260 EVEQIKDDNF NFNGFIRGPC EGLRPRAGKD AMSRSGIDNL HKEVEEKPVT KKVKKPLDPP 1320 NPKYKKEQER KSHRCDLEGC RMSFGTKAEL VLHKRNRCPH EGCGKRFSSH NYAMIHSRVH 1380 DDDRPLKCPW TGCSMSFKWA WARTEHIRVH TGERPYQCKV EGCGLSFRFV SDFSRHRRKT 1440 GHYVS

Sequence ? help Back to Top

Protein Sequence Length: 1445 aa Download sequence

MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK CPELGSDVNL LNDCSPLKTG SGDGRNDGEA RAVFTTRHQE LGQSVKRVKG  120
AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE EMFWKAASEK  180
PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKTSDLI SSSERDSHSI  240
EVKNASPKNV SDTCLEVSNS STAPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW  300
NLQVIARSPG SLTRFMPDDI PGVTSPMIYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW  360
YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVASGI PCCRLIQNPG  420
EFVVTFPRAY HVGFSHGFNC GEAANFGTPH WLEVAKEAAV RRAAMNYLPM LSHQQLLYLL  480
TMSFVSRVPR SLLPGVRGSR MRDRQKEERE LSVKKAFVED MLKENNVLSA LLRKESSYHA  540
VLWNPDLLPY TSKEPQTPSA GHHAFVKGCV TEDPSPVPNV MSPAKDPLIP STTKLNKDWN  600
TVNKFLRPRS FCLEHAVEIV ELLQSKGGAN VLVICHSDYQ KIKAPSAAIA EEIGCSFNYT  660
EVPLDIASKE DLNLIDLAVD DEHDECREDW TSKLGINLRY CVKVRKNSSS KQVQHALTLG  720
GLFSKQSPSS DFQRVKWQSK RSRSKKLNHP AHCRPCGSIE KKDEVVERKA DDTSFKRDEK  780
IIQYSRRNYK LKAGDSTGAG RICGYPATCG EGDKHSRMAS ESNIRDIGNS TSGCARFYSS  840
KSNRMSETYP VVQMLEATKD ISLYSTPSQV AAKLATTTLI AEGVEAQVEN HSSEGRNMYG  900
EGCGLVSRDS SDMQDEIAIP EEASENKSEA QMVNTVMEIS CMNSEVCDSM TLGDEVQQEN  960
QTTNKRNDNA PVSCSSHLLQ DPTFAAAVDY DGCPRETHIA DEFSKDVSLE FKLEEEIKSL  1020
KGRNEEPSLS PTRQINEPSP ASIEGTSGVP RELCAAEDSL PGPISCSEEF RTADRSEGEH  1080
VSTSVTQMEI TQPCISMEES SQVPRGCSSE EGPDNGVTSE TVQQEVQTTN RPIKEPILGL  1140
VIETENQPTS GSVEEFEVLR VTCATDNING FVALDNKEQR KTQTTNSSEE LIYSQDIARC  1200
QPLPASIQTY SRIKREPRAS QGLRNSSEVC LSPLDKELES IGSSIADPAP IPEMGRKRKR  1260
EVEQIKDDNF NFNGFIRGPC EGLRPRAGKD AMSRSGIDNL HKEVEEKPVT KKVKKPLDPP  1320
NPKYKKEQER KSHRCDLEGC RMSFGTKAEL VLHKRNRCPH EGCGKRFSSH NYAMIHSRVH  1380
DDDRPLKCPW TGCSMSFKWA WARTEHIRVH TGERPYQCKV EGCGLSFRFV SDFSRHRRKT  1440
GHYVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1314	1331	KKPLDPPNPKYKKEQERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein