PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000084.1_g450.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 351aa    MW: 37573.2 Da    PI: 6.0532
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000084.1_g450.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17254287134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Pav_sc0000084.1_g450.1.mk 254 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 287
                                99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MIGNFIDEID CGSFFDTIDD LLDFPNDDVE SGLGSAPDCN AAFNNNSLWP NQSGSLPAPN  60
DAVFSAGNSA SDLSAELSVP IEDIVQLEWL SNFVEDSFSG GSLTINKPDS FINKDTSHHQ  120
FQTSSPISVL DSSSSCSGDK NVPQSPGPVA APGKRGRARS KRPRPATFNP RPAIQLISPA  180
SSVTEAEGPQ AQPFLAPKVP SDSENFAESR PVIKIPKQAS GELKKKKKLK VSLPLAPLEG  240
NQNSGPTQAA VRKCLHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF  300
VPSLHSNSHK KVLEMRTKGG ELVVFGETAT AMSETPELIP NTNSSISMDY M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
2223229LKKKKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-42GATA family protein