PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000084.1_g430.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 716aa    MW: 79165.2 Da    PI: 7.0433
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000084.1_g430.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23122223199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +g
  Pav_sc0000084.1_g430.1.mk 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAG 203
                                89****************************986445444..8999*************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + +++ l+v+++r+
  Pav_sc0000084.1_g430.1.mk 204 DSIVFF--RAESGDLCVGIRRA 223
                                ******..4489999****997 PP
2Auxin_resp113.42.1e-37283366183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a+++++FevvY+Prast+eF+vk+ +v++a++++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWp+S+Wr+L+
  Pav_sc0000084.1_g430.1.mk 283 AATLAASGQPFEVVYYPRASTPEFCVKATSVRAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISYVQVADPSRWPESPWRLLQ 366
                                68899*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    
MITVMDSVRE PMNNNSENWL DSKFWHACAG GMVQMPHINS KVFYFPQGHA ECAHGKVDFG  60
NSRIPPLILS RISAIRYMAD RETDEVYAKI RLIPIRENAF DLEDGFVENN VTVENPEKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFFR AESGDLCVGI RRAKRGIGGG PEYPSGWNPA  240
AENSGSHYGG YSGFPRENGN NLMERNSSSE GRGKIRAEYV IEAATLAASG QPFEVVYYPR  300
ASTPEFCVKA TSVRAAMQIQ WCSGMRFKMP FETEDSSRIS WFMGTISYVQ VADPSRWPES  360
PWRLLQVSWD EPDLLQNVKR VSPWLVELVS SIPAIHLSPF SPPRKKLRLQ HNPADYSLVS  420
QLPMPSVCSN FLNSSNPLCS VSDKISAGIQ GARQAQFGLS SSDVFFNKLH SGMFPVGNPL  480
CSVSDKISAG IQGARQAQFG LSSSDVFFNK LHSGMFPVGY QKLGHFAPSG IPEGNFMHMA  540
ESNENISCCL TKGIPSQHLK GNGEIKTPHI LLFGQLILTE QQMSKSSSGD CSSSDGHPEK  600
KGNCSDGSGS ALHRNGSVEN SSDEGSPWNK DHQKSNVSLD TSYCKVFIES GDVGTLDLSV  660
LGSYKELYGK LADMFGLENS EMLRNVLYRD AEGAIKHTED EPFSEFLKTA RRLYMG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein