PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000084.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1662aa MW: 181264 Da PI: 6.8375

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000084.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.3e-10	774	817	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE el+++ + G++ +++Ia+ + ++t +c+++++k+ Pav_sc0000084.1_g080.1.mk 774 NPWTPEEKELFIEKLTTCGKD-FRKIASFLD-HKTTADCVEFYYKH 817 69***************99.*****.**********97 PP
2	Myb_DNA-binding	25.8	2.5e-08	965	1005	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E +++av +G++ ++ I+r++ +R+ qck ++ Pav_sc0000084.1_g080.1.mk 965 DWTDVEKSSFIQAVSSYGKD-FAMISRCVR-TRSQHQCKVFFS 1005 6***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1662 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSPHHAPR DFNRWPSADF RRPPGHGKQG 60 GWHLFSEDSG HGYASSRSGD KMLEDESCRP SFSRGDGRYG RNSRDNRGSY SQRECKGHSW 120 ETSSGSPNTP GRPNDVINEQ RTQDDMLTYS SHPHSDFGST WDQIQLKDQL DRMGGSTGLG 180 AGQKCERENS LGSIDWKPLK WTRSGSMSSR GSGFSHSSSS KSIGAIDFNE AKLESQLKNA 240 TPVQSPSGEA TTCVTSAAPS EETTSRKKPR LGWGEGLAKY EKKKVEVPDG SMNKDGAVCS 300 VGNMEPVHSL SSNLADKSPR VTVFSDCASP ATPSSVACSS SPGVEEKSFG KTANVDNNNR 360 NFFGSPGPMF QSHHEGFTFN LEKLDCNSIA NLGSSLRELL QSDDPSSVDS GIVRPTAMNK 420 LLIWKGEISK VLEVTESEID SLENELKVTV TNLITRPAPL QIHSSGDTDV EKMCLGNGDQ 480 VEFCGIVKDE DIDSPGTATS KFVEPLPLVK VVSSSDVMSH NDCSGDLDPI EMTKGEAKCL 540 VPGKYEEKTD LAACGNSSML LGSEIVAPVS GGSSLCFSVV DTICDSICSS NKESANRSFD 600 VFNKLLPREH YKVDISGVSI SSSGKNDPLI KEKFAMRKRR LRFMERVLTL KYKAFQHLWK 660 EDLRLLSIRK YRSKSHKKFE LSLRATNNGY QKHRSSIRSR FATPAGNLSL VPTTEIINFT 720 NKLLSDSQVK LYRNSLKMPA LILDKKEKMV TRFISSNGLV EDPCVVEKER ALMNPWTPEE 780 KELFIEKLTT CGKDFRKIAS FLDHKTTADC VEFYYKHHKS VCFEKTKKKA DMTKQGKSSA 840 KTYLISNGKK WNREMNAASL DILGAASAIA AHADGSTRSR QAYSGRLFLG GYRNTNPSRG 900 ICGSLSSEAV SSCITSSIDP GEGYREWKCQ KVDSLARRPL TPDVMQNVDD ETCSEESCGE 960 MDPSDWTDVE KSSFIQAVSS YGKDFAMISR CVRTRSQHQC KVFFSKARKC LGLDLVHPVA 1020 GNGTSVGDDV NGGGSDAEDA CVLETGSGIS SDKSGCRMNE DMLLSVINMD DESDPAETMN 1080 LQTGPLRSEE NNVMGQVDHE GGKTLKSLAS DAVEAEDRPN LVLDDADCVR DAQKSRVCSA 1140 DAPRDDVAEK GILIAESLPV GGGINFDPTN PGMDGEKLMG ELSSDGNTDT SRCSLPGSVH 1200 DSNSSGNASA LAGGGSCSGF SLNPECLPQV SVGLNSLQNS SVISMPHENR HAPADSVSQD 1260 SAKIECEKAL NQDRLSSTLD LQEGREPKSV GIDECHKHLP GLPIYTNVES FQVLKGYPLQ 1320 MATKKDTNGD VTSGNLSEVQ NFSKPDRKIN GHYMTKDGFL QFGNCKPQCS EVDFPLAPQK 1380 VEQPVGPPKA HSWSSSDSDK PSRNGDVKLF GKILSNPSSL PKSGSNIHEN EEKGAHNHKL 1440 SNTSSNLKFT GHHNADGNSS VLKFDCSSYL GIEKVPRRSY GFWEGNKVHA GYPSFPDSAI 1500 LLAKYPAAFG NFPTSSSKME QQPLQVKNND RNMNGVSVFP SREISGSNGV VDYPVFSRSR 1560 DGAKVPPFTV DVKQQQRQDV FDMPRRNGFD TISSLQQQGR GIVGMNVVGR GGILVGGPCT 1620 GVSDPVAAIR MHYAKTEQYG GQPGSMIREE ESWRGGKGDV GR

Sequence ? help Back to Top

Protein Sequence Length: 1662 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSPHHAPR DFNRWPSADF RRPPGHGKQG  60
GWHLFSEDSG HGYASSRSGD KMLEDESCRP SFSRGDGRYG RNSRDNRGSY SQRECKGHSW  120
ETSSGSPNTP GRPNDVINEQ RTQDDMLTYS SHPHSDFGST WDQIQLKDQL DRMGGSTGLG  180
AGQKCERENS LGSIDWKPLK WTRSGSMSSR GSGFSHSSSS KSIGAIDFNE AKLESQLKNA  240
TPVQSPSGEA TTCVTSAAPS EETTSRKKPR LGWGEGLAKY EKKKVEVPDG SMNKDGAVCS  300
VGNMEPVHSL SSNLADKSPR VTVFSDCASP ATPSSVACSS SPGVEEKSFG KTANVDNNNR  360
NFFGSPGPMF QSHHEGFTFN LEKLDCNSIA NLGSSLRELL QSDDPSSVDS GIVRPTAMNK  420
LLIWKGEISK VLEVTESEID SLENELKVTV TNLITRPAPL QIHSSGDTDV EKMCLGNGDQ  480
VEFCGIVKDE DIDSPGTATS KFVEPLPLVK VVSSSDVMSH NDCSGDLDPI EMTKGEAKCL  540
VPGKYEEKTD LAACGNSSML LGSEIVAPVS GGSSLCFSVV DTICDSICSS NKESANRSFD  600
VFNKLLPREH YKVDISGVSI SSSGKNDPLI KEKFAMRKRR LRFMERVLTL KYKAFQHLWK  660
EDLRLLSIRK YRSKSHKKFE LSLRATNNGY QKHRSSIRSR FATPAGNLSL VPTTEIINFT  720
NKLLSDSQVK LYRNSLKMPA LILDKKEKMV TRFISSNGLV EDPCVVEKER ALMNPWTPEE  780
KELFIEKLTT CGKDFRKIAS FLDHKTTADC VEFYYKHHKS VCFEKTKKKA DMTKQGKSSA  840
KTYLISNGKK WNREMNAASL DILGAASAIA AHADGSTRSR QAYSGRLFLG GYRNTNPSRG  900
ICGSLSSEAV SSCITSSIDP GEGYREWKCQ KVDSLARRPL TPDVMQNVDD ETCSEESCGE  960
MDPSDWTDVE KSSFIQAVSS YGKDFAMISR CVRTRSQHQC KVFFSKARKC LGLDLVHPVA  1020
GNGTSVGDDV NGGGSDAEDA CVLETGSGIS SDKSGCRMNE DMLLSVINMD DESDPAETMN  1080
LQTGPLRSEE NNVMGQVDHE GGKTLKSLAS DAVEAEDRPN LVLDDADCVR DAQKSRVCSA  1140
DAPRDDVAEK GILIAESLPV GGGINFDPTN PGMDGEKLMG ELSSDGNTDT SRCSLPGSVH  1200
DSNSSGNASA LAGGGSCSGF SLNPECLPQV SVGLNSLQNS SVISMPHENR HAPADSVSQD  1260
SAKIECEKAL NQDRLSSTLD LQEGREPKSV GIDECHKHLP GLPIYTNVES FQVLKGYPLQ  1320
MATKKDTNGD VTSGNLSEVQ NFSKPDRKIN GHYMTKDGFL QFGNCKPQCS EVDFPLAPQK  1380
VEQPVGPPKA HSWSSSDSDK PSRNGDVKLF GKILSNPSSL PKSGSNIHEN EEKGAHNHKL  1440
SNTSSNLKFT GHHNADGNSS VLKFDCSSYL GIEKVPRRSY GFWEGNKVHA GYPSFPDSAI  1500
LLAKYPAAFG NFPTSSSKME QQPLQVKNND RNMNGVSVFP SREISGSNGV VDYPVFSRSR  1560
DGAKVPPFTV DVKQQQRQDV FDMPRRNGFD TISSLQQQGR GIVGMNVVGR GGILVGGPCT  1620
GVSDPVAAIR MHYAKTEQYG GQPGSMIREE ESWRGGKGDV GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-168	MYB family protein