PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000072.1_g340.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 438aa MW: 47228 Da PI: 9.6871

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000072.1_g340.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.9	1.5e-22	113	158	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s Pav_sc0000072.1_g340.1.mk 113 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 158 679***************************************9985 PP
2	WRC	67.1	2.3e-21	318	359	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+++k+C H+hrg +r+ k + Pav_sc0000072.1_g340.1.mk 318 LEPGRCRRTDGKKWRCRRDVLPDQKYCGQHIHRGAKRQMKDF 359 59************************************9976 PP
3	QLQ	56.9	6.5e-20	46	80	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Ta+Ql++L++Q+l+yK++aan+PvP +L+++i+k Pav_sc0000072.1_g340.1.mk 46 LTASQLHELEQQALIYKHFAANLPVPFHLVLPIWK 80 7********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MTMEEEGGGK VKLGLGIGVD CYGDDRNGTE EVVVGKKKKK YGGGGLTASQ LHELEQQALI 60 YKHFAANLPV PFHLVLPIWK SVAASFGSSN AAAIYRQYPS FVGFSALGFD YRDHEPGRCR 120 RTDGKKWRCN KNVVPDQKYC QQHMHRGRQR SRKPVENSEV ASPSSTKTPK NSEGEFQIST 180 PKGLQLMAQS YNYVSVSQGT TMASSGYHEC KKNIRPVTTT SIANIPANRS ATTTPAAVAA 240 TTIAGPTTAT NSSTNENSLN IGVKYNSSNH AGGNCMIRGS SMNVVNISPG LGFSPKSVLQ 300 ALLGCNGLYF DNGSGVELEP GRCRRTDGKK WRCRRDVLPD QKYCGQHIHR GAKRQMKDFQ 360 PVAVPSSSAA AMNTARLSQT TAICRKINCA IPNTNLSISI PANPPPGRND ERSNSSSDSD 420 TTLTDTSLTA CDSSYVSS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MTMEEEGGGK VKLGLGIGVD CYGDDRNGTE EVVVGKKKKK YGGGGLTASQ LHELEQQALI  60
YKHFAANLPV PFHLVLPIWK SVAASFGSSN AAAIYRQYPS FVGFSALGFD YRDHEPGRCR  120
RTDGKKWRCN KNVVPDQKYC QQHMHRGRQR SRKPVENSEV ASPSSTKTPK NSEGEFQIST  180
PKGLQLMAQS YNYVSVSQGT TMASSGYHEC KKNIRPVTTT SIANIPANRS ATTTPAAVAA  240
TTIAGPTTAT NSSTNENSLN IGVKYNSSNH AGGNCMIRGS SMNVVNISPG LGFSPKSVLQ  300
ALLGCNGLYF DNGSGVELEP GRCRRTDGKK WRCRRDVLPD QKYCGQHIHR GAKRQMKDFQ  360
PVAVPSSSAA AMNTARLSQT TAICRKINCA IPNTNLSISI PANPPPGRND ERSNSSSDSD  420
TTLTDTSLTA CDSSYVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-29	GRF family protein