PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000071.1_g540.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 213aa    MW: 23713.3 Da    PI: 11.1446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000071.1_g540.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08125165954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pav_sc0000071.1_g540.1.mk 125 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 165
                                699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MDFTWGSNSN SNSNITNNIE TISSLPIFHN PNALSSQHSQ PTLINPALPS SVSFMGNQIQ  60
EPLTPRLIKT SPPPNSYEKR NSMAAMREMI FRIAAMQPIQ IDPESVKPPK RRNVKISKDP  120
QSVAARHRRE RISEKIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ TLERAGADRP  180
IGVGFQGAGQ LGNVNYSALL RPSQLVGSMQ MLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-49bHLH family protein