PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000069.1_g660.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 512aa MW: 56190.3 Da PI: 7.9701

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000069.1_g660.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	90	110	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Pav_sc0000069.1_g660.1.mk 90 CEICNKGFQREQNLQLHRRGH 110 *******************88 PP
2	zf-C2H2	12.5	0.00043	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Pav_sc0000069.1_g660.1.mk 164 WKCEKCSKRYAVQSDWKAHSKIC 186 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQQQPPPPKK 60 KRNLPGNPDP DAEVIALSPK SLMATNRFLC EICNKGFQRE QNLQLHRRGH NLPWKLKQRT 120 NKEVRKKVYL CPEPTCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKICGTRE RDSFITHRAF CDALAQENST STAARSAMPA SINPLLSSLP QLHTHGLQGL 240 SVKREQDQQQ LLPPWLSCLP EGEATAPSGL PSMNMSSPLF STSSFQQYYS FDHQNPNPSS 300 SSTTTLPDFQ QSHTASPHMS ATALLQKASE MGATISKPSH SPMFLKPPSH QAHVSNEAFD 360 DGFGNNDNKS SLLHDMMMMS NSFGDQQVSS AFGDHHQAFN GIMVDGNNNF VEINNNNNNN 420 INPPKNYKSM ELAQLGRSGT DNNNNDEGLT RDFLGLRAPF SSSAAAAAAA SHGHGDFFNI 480 NMAGLDHHVN SSSSSAYNGQ PSDHQNQTSW QG

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQQQPPPPKK  60
KRNLPGNPDP DAEVIALSPK SLMATNRFLC EICNKGFQRE QNLQLHRRGH NLPWKLKQRT  120
NKEVRKKVYL CPEPTCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK  180
AHSKICGTRE RDSFITHRAF CDALAQENST STAARSAMPA SINPLLSSLP QLHTHGLQGL  240
SVKREQDQQQ LLPPWLSCLP EGEATAPSGL PSMNMSSPLF STSSFQQYYS FDHQNPNPSS  300
SSTTTLPDFQ QSHTASPHMS ATALLQKASE MGATISKPSH SPMFLKPPSH QAHVSNEAFD  360
DGFGNNDNKS SLLHDMMMMS NSFGDQQVSS AFGDHHQAFN GIMVDGNNNF VEINNNNNNN  420
INPPKNYKSM ELAQLGRSGT DNNNNDEGLT RDFLGLRAPF SSSAAAAAAA SHGHGDFFNI  480
NMAGLDHHVN SSSSSAYNGQ PSDHQNQTSW QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-96	C2H2 family protein