PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000065.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 1034aa MW: 115030 Da PI: 7.3282

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000065.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.7	9.1e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++ v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Pav_sc0000065.1_g080.1.mk 147 VCQVEDCKADLSHAKDYHRRHKVCDMHSKATKARVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 224 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence
MEAFGGSARN FYGPIVSDLK AVGKKSLEWD LNDWKWDGDL FTASPLNSIP SDFRSRQLFP 60 AQPETPSNAG LSNSSSSGSD DISPGNEKGK RELEKRRRAT FVENEELNNE AGSLNLKLGE 120 QAYPIMEGEV QTGKKTKIVG TTLNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAR 180 VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDPVVNG GSLNDERGSS 240 YLLISLLRIL SNMHSNSSDQ TKDQDLLSHL LRSLANLAGT VDGRSISALL PGSQGLLNSG 300 SSVQTAQKVP DTVSNGCEPS RPSVSASKRD DCVNLEDPLR PIRQCPTVPA SDLLQKRISS 360 VDADHRSLQV VSGLQAAKPL PSRDSVPSKS VAPDATMGRM QLNGIDLNNT YDDSQDYLEN 420 LGSSHSPVNP GTVSLGFPLW MQQESQKSSP PQTSGTSDST STQSPSTSSG EAQSRTDRIV 480 FKLFGKDPNE LPFVLRSQIL DWLSHSPSDI ESYIRPGCII LTIYLRLEKS TWEELCCHLG 540 SNLKRLLHAA NDPFWTTGWV YTRVQHFVAF TYNGQVVLDT PLPLKSHKNC RISYIKPIAV 600 SLSERAQFVV KGFNLSRSTT RLLCALEGKY LVQETCYDLM DSADTTVEHD EQQCLRFSCS 660 IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVAETADD IQREPEKLEA 720 KNLAMDFIHE LGWLLHRSHT KFRLGHMDPN LDLFPFRRFR LLMEFSMDHD WCAVVKKLLG 780 ILFEGTVDAG EHPSIELALL DMSLLHRAVR RKCRSMVELL LRFVPDKGLD KTGSEQKQQV 840 DRDGNNFLFK PDAVGPMGLT PLHVAASTDG CENILDALTD DPGKVGIEAW KYARDSTGLT 900 PNDYACLRGR YSYLHIVQRK ISKKLESGQV VLDIPGTILD SNSKQKQSDG HKSSKVASLE 960 TEKIEIKAMQ GHCKLCEMKL AYGNTRSLVY RPAMLSMVAI AAVCVCVALL FKSSPEVVYV 1020 FQPFRWELLK YGPS

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence

MEAFGGSARN FYGPIVSDLK AVGKKSLEWD LNDWKWDGDL FTASPLNSIP SDFRSRQLFP  60
AQPETPSNAG LSNSSSSGSD DISPGNEKGK RELEKRRRAT FVENEELNNE AGSLNLKLGE  120
QAYPIMEGEV QTGKKTKIVG TTLNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAR  180
VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDPVVNG GSLNDERGSS  240
YLLISLLRIL SNMHSNSSDQ TKDQDLLSHL LRSLANLAGT VDGRSISALL PGSQGLLNSG  300
SSVQTAQKVP DTVSNGCEPS RPSVSASKRD DCVNLEDPLR PIRQCPTVPA SDLLQKRISS  360
VDADHRSLQV VSGLQAAKPL PSRDSVPSKS VAPDATMGRM QLNGIDLNNT YDDSQDYLEN  420
LGSSHSPVNP GTVSLGFPLW MQQESQKSSP PQTSGTSDST STQSPSTSSG EAQSRTDRIV  480
FKLFGKDPNE LPFVLRSQIL DWLSHSPSDI ESYIRPGCII LTIYLRLEKS TWEELCCHLG  540
SNLKRLLHAA NDPFWTTGWV YTRVQHFVAF TYNGQVVLDT PLPLKSHKNC RISYIKPIAV  600
SLSERAQFVV KGFNLSRSTT RLLCALEGKY LVQETCYDLM DSADTTVEHD EQQCLRFSCS  660
IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVAETADD IQREPEKLEA  720
KNLAMDFIHE LGWLLHRSHT KFRLGHMDPN LDLFPFRRFR LLMEFSMDHD WCAVVKKLLG  780
ILFEGTVDAG EHPSIELALL DMSLLHRAVR RKCRSMVELL LRFVPDKGLD KTGSEQKQQV  840
DRDGNNFLFK PDAVGPMGLT PLHVAASTDG CENILDALTD DPGKVGIEAW KYARDSTGLT  900
PNDYACLRGR YSYLHIVQRK ISKKLESGQV VLDIPGTILD SNSKQKQSDG HKSSKVASLE  960
TEKIEIKAMQ GHCKLCEMKL AYGNTRSLVY RPAMLSMVAI AAVCVCVALL FKSSPEVVYV  1020
FQPFRWELLK YGPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein