PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000063.1_g120.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 983aa MW: 108715 Da PI: 8.9412

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000063.1_g120.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.9	8.3e-21	891	971	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W+ +ev +Li++r ++ +r++ k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g++++ +++pyf++ Pav_sc0000063.1_g120.1.mk 891 KWKPEEVEKLIKMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSQ-----KSWPYFEE 969 7****************************************************************9984.....56**** PP trihelix 85 le 86 ++ Pav_sc0000063.1_g120.1.mk 970 MD 971 *7 PP

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence
SLHLPLSCSK NDKKDISEAY KNPLKLTSLA APLSPFPASN NARQTPQSYP GVSFPPFRLS 60 ETSNSKLMQL GVLGGLSVHH SLCSAPFRPS VSTQMAAFGA LSPCPYSLLW RPKPTNRCVS 120 CSVGSSAVTG TRGSNVKRSG RMEGPRKSME DSVQRKMEQF YEGREGPPIR VLPIGGLGEI 180 GMNCMLVGNY DRYILIDAGV MFPDFDELGV QKIIPDTTFI KKWSHKIEAI VITHGHEDHI 240 GALPWVIPAL DPRTPIFASS FTMELIKKRL KEHGIFVPSR LKTFRTKRKF MAGPFEIEPV 300 RVTHSIPDCC GLVLRCSDGT ILHTGDWKID ESPLDGRGFD REALEELSKE GVTLMMSDST 360 NVLSPGRTTS ETSVADALLR HISAAKGRVI TTQFASNIHR LGSVKAAADF TGRKLVFVGM 420 SLRTYLDAAW KDGKAPIDPS SLVKVEDIDS YAPKDLLIVT TGSQAEPRAA LNLASFGSSH 480 SVKLTKEDII LYSAKVIPGN ESRVMKMLNR ISEIGSTIVM GKNEGLHTSG HGYRGELEEV 540 LQIVKPQHFL PIHGELLFLK EHELLGRSTG IRHTTVIKNG EMLGVSHLRN RRVLSNGFTL 600 LGKENLQLKF SDGDKAFGTS SELCVDERLR VALDGIIVVS MEILRPQNVN GLTENSIKGK 660 IKITTRCLWL DKGKLIDALH KAAHAALSSC PINCPLPHME RTVSEVLRKL VRKYSGKRPD 720 VIAIAMENPA AVLADEVSVR LSGKSHVGSE MSTLRKVIDR HPYKSQSNRT QADEGKDNAR 780 LQSTSQQDTE ELTSGMFYYF ISSEYVLEDD GIEVEVLLPE EDSATSNSKS EKLSSDSEKS 840 DDFWNAIVRL STVDKSVEDK NGLAVQQEHL KKDGPDSSEI PNPSKPVKRN KWKPEEVEKL 900 IKMRGKLRSR FQVVKGRMAL WEEISRNLLA DGINRSPGQC KSLWASLVQK YEESKSGKRS 960 QKSWPYFEEM DGALSDSEEM ATK

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence

SLHLPLSCSK NDKKDISEAY KNPLKLTSLA APLSPFPASN NARQTPQSYP GVSFPPFRLS  60
ETSNSKLMQL GVLGGLSVHH SLCSAPFRPS VSTQMAAFGA LSPCPYSLLW RPKPTNRCVS  120
CSVGSSAVTG TRGSNVKRSG RMEGPRKSME DSVQRKMEQF YEGREGPPIR VLPIGGLGEI  180
GMNCMLVGNY DRYILIDAGV MFPDFDELGV QKIIPDTTFI KKWSHKIEAI VITHGHEDHI  240
GALPWVIPAL DPRTPIFASS FTMELIKKRL KEHGIFVPSR LKTFRTKRKF MAGPFEIEPV  300
RVTHSIPDCC GLVLRCSDGT ILHTGDWKID ESPLDGRGFD REALEELSKE GVTLMMSDST  360
NVLSPGRTTS ETSVADALLR HISAAKGRVI TTQFASNIHR LGSVKAAADF TGRKLVFVGM  420
SLRTYLDAAW KDGKAPIDPS SLVKVEDIDS YAPKDLLIVT TGSQAEPRAA LNLASFGSSH  480
SVKLTKEDII LYSAKVIPGN ESRVMKMLNR ISEIGSTIVM GKNEGLHTSG HGYRGELEEV  540
LQIVKPQHFL PIHGELLFLK EHELLGRSTG IRHTTVIKNG EMLGVSHLRN RRVLSNGFTL  600
LGKENLQLKF SDGDKAFGTS SELCVDERLR VALDGIIVVS MEILRPQNVN GLTENSIKGK  660
IKITTRCLWL DKGKLIDALH KAAHAALSSC PINCPLPHME RTVSEVLRKL VRKYSGKRPD  720
VIAIAMENPA AVLADEVSVR LSGKSHVGSE MSTLRKVIDR HPYKSQSNRT QADEGKDNAR  780
LQSTSQQDTE ELTSGMFYYF ISSEYVLEDD GIEVEVLLPE EDSATSNSKS EKLSSDSEKS  840
DDFWNAIVRL STVDKSVEDK NGLAVQQEHL KKDGPDSSEI PNPSKPVKRN KWKPEEVEKL  900
IKMRGKLRSR FQVVKGRMAL WEEISRNLLA DGINRSPGQC KSLWASLVQK YEESKSGKRS  960
QKSWPYFEEM DGALSDSEEM ATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein