PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000057.1_g100.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 117aa MW: 13259 Da PI: 4.5475 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 59 | 1.4e-18 | 1 | 55 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++++e Pav_sc0000057.1_g100.1.mk 1 MQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQMQLAVAQAE 55 6899***********************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence |
MQELPVHQRA DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ 60 MQHEPMVPTQ QQILDTDEKS YFLPNNFPQY LNFPSSSSNV IHDSLKRESI FGHDMVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-41 | LBD family protein |