PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000052.1_g660.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 450aa MW: 51188.4 Da PI: 6.0546

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000052.1_g660.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.7	5.7e-22	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt++ v++Li+++ ++++ ++ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ + Pav_sc0000052.1_g660.1.mk 122 KWTDNVVRLLIAIVACVGDDGTLESgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtS 205 7************555554432223555666888********************************************66 PP trihelix 73 sessstcpyfdql 85 ++++++ ++ d++ Pav_sc0000052.1_g660.1.mk 206 CRVVENPALMDSM 218 9999999888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MDGSGLGGGF LSGPNGGMLD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL 60 VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR 120 MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRC SKDNNGSDEE EAEENHDTED DELDNEDDND 300 ADNDRERMGR MGDRKKASEE DGHFWPQYVL LDSFEVEMGE IFQDPTKSLW ERRDWIKKQK 360 LQLQEQRVGF QAEALELEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RKVLQLRQKE 420 LEVDLRRSEA SLEPSSLGLG RDQIDLGRHQ

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MDGSGLGGGF LSGPNGGMLD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL  60
VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR  120
MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRC SKDNNGSDEE EAEENHDTED DELDNEDDND  300
ADNDRERMGR MGDRKKASEE DGHFWPQYVL LDSFEVEMGE IFQDPTKSLW ERRDWIKKQK  360
LQLQEQRVGF QAEALELEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RKVLQLRQKE  420
LEVDLRRSEA SLEPSSLGLG RDQIDLGRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-72	Trihelix family protein