PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000042.1_g510.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 338aa MW: 37809 Da PI: 5.5634

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000042.1_g510.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.8	4.6e-21	38	132	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rWt++e+ +Lie+++ +e+++++g+ +p+W+ vs+++++rg++r+p+qC+++w+nl ++kki+++e++ + Pav_sc0000042.1_g510.1.mk 38 RWTRHETFVLIEGKKVVENAVQKGRsrsssalgsdHFEPKWDLVSSYCKQRGVSREPVQCRKRWSNLLVDFKKIRNRESQIKGA 121 8*******************986666777777688****************************************99888 PP trihelix 75 ssstcpyfdql 85 ++s +++ +++ Pav_sc0000042.1_g510.1.mk 122 AESFWVMRNDV 132 88888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MALDSIKHEG ASSTTPDQVD RQQVPNGSSD DRAKRHPRWT RHETFVLIEG KKVVENAVQK 60 GRSRSSSALG SDHFEPKWDL VSSYCKQRGV SREPVQCRKR WSNLLVDFKK IRNRESQIKG 120 AAESFWVMRN DVRKERKLPG FFDREVYNIL DGNAATATAA CPLALFIPVQ TNAQSGDGAE 180 EAAAEEEEEE QPGKAANGLQ QDMAEDGLSS DSEESEQEET ESKKENLMQD SPATTVTTPM 240 PSSGTIKEKR GLDSNTCGEH ISQEKRKLRR LAIDGCEDNY SDQLIRVLER NNALLNAQLE 300 ARNINCHLDR EQRKEQSNSL LAAISKVTDA LVRIADKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	271	EKRKLRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-72	Trihelix family protein