PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000037.1_g250.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 267aa    MW: 28918.6 Da    PI: 8.319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000037.1_g250.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.3e-1176122354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  +k+L
  Pav_sc0000037.1_g250.1.mk  76 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLATVISQVKEL 122
                                58*************************8.....7********9999888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MDFYSFNSNS SFRSEYSSLF DPFTHGSSGF GGALRGGGSV LPHSLVLDSE KGELVKAPAR  60
VGKKGVSEAK ALAALKNHSE AERRRRERIN AHLSTLRGLV PCTEKMDKAA LLATVISQVK  120
ELKKDALESS KGFLIPVDAD EVQVEPYDTG AGDGTISVRA SVCCEYRSEL LSDLREALDS  180
LHLKMVKAEI ATLGNRVKNV FVFTSCKERS NDADADAFAF QLLASSVHQA VSSVLDKASA  240
SPEYSPRTTL PSKRRRISYF DTSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
2253257KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-35bHLH family protein