PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000030.1_g1200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 435aa MW: 48069.3 Da PI: 9.8414

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000030.1_g1200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.3e-05	199	221	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H Pav_sc0000030.1_g1200.1.mk 199 SCPECGEIFMKAENLELHQAVrH 221 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MAPKLKTQRK PTKQILQKAQ KQNQNQNQKP QKTEKPPYWS VVRGLLTCKQ LQPLQLQQGR 60 KQQLLQQQQQ HEQAMEESNA AKKSKKMRCS GSLCNNTKIM HRPEIGSPEV HKKRASMGSS 120 YSNETSSRSM KAPLHELNGV VSTSSSSLSA VSTNNSSVGG GSFRAMPFRR FSGCYECRMV 180 VDPVLGFARD PSLRGSICSC PECGEIFMKA ENLELHQAVR HAVSELGPED TSKNIVEIIF 240 QSSWLKKQTP ICKIDRILKV HNTQKTISKF EEYRESIKAK ATKLPKKHPR CIADGNELLR 300 FHSTTFVCSL GLNGSSNLCN SIPHCNICSI IKSGFNKFSG DLIEDGILTT ATSGRAHDKA 360 VVAAEDSGKR AMLVCRVIAG RVKKNMEDSI GIGPIGMEEY DSVAGAVGVY SNLDELYVFN 420 PKAILPCFVV IYGGF

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MAPKLKTQRK PTKQILQKAQ KQNQNQNQKP QKTEKPPYWS VVRGLLTCKQ LQPLQLQQGR  60
KQQLLQQQQQ HEQAMEESNA AKKSKKMRCS GSLCNNTKIM HRPEIGSPEV HKKRASMGSS  120
YSNETSSRSM KAPLHELNGV VSTSSSSLSA VSTNNSSVGG GSFRAMPFRR FSGCYECRMV  180
VDPVLGFARD PSLRGSICSC PECGEIFMKA ENLELHQAVR HAVSELGPED TSKNIVEIIF  240
QSSWLKKQTP ICKIDRILKV HNTQKTISKF EEYRESIKAK ATKLPKKHPR CIADGNELLR  300
FHSTTFVCSL GLNGSSNLCN SIPHCNICSI IKSGFNKFSG DLIEDGILTT ATSGRAHDKA  360
VVAAEDSGKR AMLVCRVIAG RVKKNMEDSI GIGPIGMEEY DSVAGAVGVY SNLDELYVFN  420
PKAILPCFVV IYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-103	C2H2 family protein