PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000027.1_g210.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 193aa    MW: 21811.5 Da    PI: 6.5079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000027.1_g210.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163658123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ F++   L  H++ H
  Pav_sc0000027.1_g210.1.mk 36 YECTFCKRGFTNAQALGGHMNIH 58
                               99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MESWRPRSPE TSLSSDEDQV KDHDQDSGST TAKRSYECTF CKRGFTNAQA LGGHMNIHRK  60
DRAKAKQLVS GTSSLNSNHY SNEDQYSSLS TYHHQQFSSA PISSQAGSGY YPVVDQRNYQ  120
MYFQPSGSSP RIPYGYDHDD SIGSRHQSLG VNQELWGANL SLRFSPNHLE DDEYRRGVRS  180
NDEVDLELRL GHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-17C2H2 family protein