PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000009.1_g210.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 409aa MW: 45985.1 Da PI: 7.3736

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000009.1_g210.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.7e-16	142	188	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v ++G + W+ Ia+++ gR +kqc++rw+++l Pav_sc0000009.1_g210.1.mk 142 KGQWTPQEDRLLVQLVGRFGIKKWSQIAKMLT-GRVGKQCRERWHNHL 188 799**************************9.***********97 PP
2	Myb_DNA-binding	56.7	5.3e-18	195	236	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eEd++l++a+kq G++ W+ Ia++++ gRt++ +k++w+ Pav_sc0000009.1_g210.1.mk 195 DMWSEEEDKILIEAHKQIGNK-WAEIAKRLP-GRTENTIKNHWN 236 67*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
GSSSNPFSGI YYNTNPHDFV AVPLAPDGIG FHGARGAYWG AHHHHHHHHH HLDGQEIPDD 60 QAQMGPQSCI QLPPLINFGE FGSSSAMDIS LPSDEVTCNS SSSTETEFCK RLSADDQKKT 120 KSLCMRRPTS SKALQKKPTI IKGQWTPQED RLLVQLVGRF GIKKWSQIAK MLTGRVGKQC 180 RERWHNHLRP DIRKDMWSEE EDKILIEAHK QIGNKWAEIA KRLPGRTENT IKNHWNATKR 240 KQNSKKKTNK DPNNNINSPE SSLLQDYIRS VFSSSSSSSS STSSASTETT EQRNALSSDH 300 SRGFHFNQNN AESLNWALTS YHPDHISNET SNNMYSQMGS VSNLFNFESY GFGGSFLVDQ 360 VTGVEEYRGS SMEAEMPLAL EIKSLMQGPD DDHVKKEMDL LEMICQGKL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

GSSSNPFSGI YYNTNPHDFV AVPLAPDGIG FHGARGAYWG AHHHHHHHHH HLDGQEIPDD  60
QAQMGPQSCI QLPPLINFGE FGSSSAMDIS LPSDEVTCNS SSSTETEFCK RLSADDQKKT  120
KSLCMRRPTS SKALQKKPTI IKGQWTPQED RLLVQLVGRF GIKKWSQIAK MLTGRVGKQC  180
RERWHNHLRP DIRKDMWSEE EDKILIEAHK QIGNKWAEIA KRLPGRTENT IKNHWNATKR  240
KQNSKKKTNK DPNNNINSPE SSLLQDYIRS VFSSSSSSSS STSSASTETT EQRNALSSDH  300
SRGFHFNQNN AESLNWALTS YHPDHISNET SNNMYSQMGS VSNLFNFESY GFGGSFLVDQ  360
VTGVEEYRGS SMEAEMPLAL EIKSLMQGPD DDHVKKEMDL LEMICQGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-61	MYB family protein