PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_co4062045.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 355aa MW: 39480.7 Da PI: 7.2146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_co4062045.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.4	2.4e-33	4	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCaaC+++r+kC +dCv+apyf ae++++f++vhk+FG+sn +kllk+l++++ r +a++s ++eA+++ +dPv+G +g +++l Pav_co4062045.1_g010.1.mk 4 ACAACRHQRKKCDDDCVMAPYFTAEKEEAFRAVHKIFGVSNTSKLLKKLEDKNhRGRAAESFIWEACMWKQDPVNGPLGKYRQL 87 7**********************************************66655************************** PP DUF260 84 qqqleqlkaelallkee 100 +++ + l+ l++++e+ Pav_co4062045.1_g010.1.mk 88 ERENALLRDALQQQQEQ 104 *****9999988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
SRHACAACRH QRKKCDDDCV MAPYFTAEKE EAFRAVHKIF GVSNTSKLLK KLEDKNHRGR 60 AAESFIWEAC MWKQDPVNGP LGKYRQLERE NALLRDALQQ QQEQEEEQEK DCLALPSSTV 120 EQESIALDQG SNNGSDMTYG YANQNLAING PANGTYSSLL QGQEVTERKG LVDNNCVTGS 180 NYQPAAISQG GQQALGQGRQ ETQRVIGFGP PSVPFDPTIQ GGNGRPMRFQ GQGRGIAGLD 240 CATNSPMGPN IYGQIRGHVA FDPSQRQFGQ VGAAQIGPKF SEGFPGHMRA VTQIQDAGFV 300 PYHHLLHHQP IHMQRQGMTQ AQNHHSFQQY SFNNHQSYET GQDVEHFNQV KSERR

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

SRHACAACRH QRKKCDDDCV MAPYFTAEKE EAFRAVHKIF GVSNTSKLLK KLEDKNHRGR  60
AAESFIWEAC MWKQDPVNGP LGKYRQLERE NALLRDALQQ QQEQEEEQEK DCLALPSSTV  120
EQESIALDQG SNNGSDMTYG YANQNLAING PANGTYSSLL QGQEVTERKG LVDNNCVTGS  180
NYQPAAISQG GQQALGQGRQ ETQRVIGFGP PSVPFDPTIQ GGNGRPMRFQ GQGRGIAGLD  240
CATNSPMGPN IYGQIRGHVA FDPSQRQFGQ VGAAQIGPKF SEGFPGHMRA VTQIQDAGFV  300
PYHHLLHHQP IHMQRQGMTQ AQNHHSFQQY SFNNHQSYET GQDVEHFNQV KSERR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	6e-26	LBD family protein