PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_co4043761.1_g010.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 291aa MW: 32879.9 Da PI: 7.0965 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 46 | 8.7e-15 | 209 | 234 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG+C+yG+ C+FaHg Pav_co4043761.1_g010.1.mk 209 FKTELCNKWQETGECPYGEHCQFAHG 234 79***********************8 PP | |||||||
2 | zf-CCCH | 19.3 | 2e-06 | 247 | 271 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Pav_co4043761.1_g010.1.mk 247 YKTEVCRMVLA-GvACPYGHRCHFRH 271 9**********.66**********88 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence |
KPSLARYNES EPDVSSNHPH RQLYHSLLVQ DHQEMVNRHS RTLKQLHEAS EEADALRREN 60 IHLRALNLEL NKHLSLLIHA SVQKQFVSPG SVETTPFGIV NRLHGMSIDD KRAEEDESDE 120 SPTSVIESEG ADAENIDVER FTLPKSISVR SNGYVKVAQP GPSTAAGTRA ATRPRTATTF 180 NASQKVYVPA GGRKEQEPLE LEVYNQGMFK TELCNKWQET GECPYGEHCQ FAHGIEELRP 240 VIRHPRYKTE VCRMVLAGVA CPYGHRCHFR HALTENEKFM GPNKPRAMKL D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-76 | C3H family protein |