PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4006843.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18952.2 Da    PI: 4.6256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4006843.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.4e-14953145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               k+i+nk   + tfskRr+g++ KA  L+ L +a++a+i fs+ +k
  Pav_co4006843.1_g010.1.mk  9 KKINNKNYLKATFSKRRKGLFCKATDLCCLSGAQIAIITFSPGNK 53
                               6899*************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MGKRKIDIKK INNKNYLKAT FSKRRKGLFC KATDLCCLSG AQIAIITFSP GNKPFIFGHP  60
SAETVIDRFL GEQASCTTDD HDDEGIGPVE AEDSHEDSEA NQEEEKEDEA GGDGEKVSVW  120
WDEPIDENLG LHELKKYKGL LECLKENVAS KLDEMNKREF YTKDYLAM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-24M-type_MADS family protein