PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03932.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 993aa MW: 108756 Da PI: 4.8478

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l POO03932.1 37 KGQWTPEEDEILRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	55.1	1.8e-17	89	130	1	43
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++r POO03932.1 89 KGPWSKEEDEIIVELVNKFGPKKWSTIAQHLP-GRIGKQCRER 130 79****************************.******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MDSDRTISNP SDGLGDGIQK IRALNGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVNKFGPK KWSTIAQHLP 120 GRIGKQCRER GMDTRRGVGF DSCSSDLWEQ MGRANEILAW EGLPQVGPQN QPIQSSSLRI 180 SGDDSGPKGT EAEEISECSQ DSTVAGRFQS AGEMANVVLY TREELQSAEV SGSGKEPNSS 240 PASCSEPYYP SMEDPSFSMT EMSHGIDCTT KYLQQSFSHD AEATMSGDYH FDLHDIPNTS 300 SIPLERESSG MQSYCLGTNE SHEVAGIPLQ TSGGFTTSSS MGNMHMGSDK PEHMLISDDE 360 CCRVLFSEAM NDECFSSRNL DLGGCSGQIL CQSSNVQISG AGGSIPSQLH RPSSSDVTGT 420 SCSQSFFSSL VSADDVPLIF GGDPNSLFVV QEQEYATCSR DGFIYTNDSA NSPCNDGIDM 480 TGLQEQLDIL KNPSKLVAVN NFGSSSDTQT CTLDARPNVD KNEQDAGALC YEPPRFPSFD 540 GPFFSCDLIQ SGSEMQQEYS PLGIRQLMMP SMNCLTPFRL WDSPTRDSSP DAVLKSAAKT 600 FTGTPSILKK RHRELLSPLS DRRKDKKLET DMTTSLTREF SRLDVVVDDS RGHKASLQFP 660 SPNRSRNSAE PSEDKENQVC SERDSEKVSS NTAFSDDRNT GKVFCDSELQ ENTKQGASEV 720 EDKTKIDIDS TSQPPFGILL EHNMNDLQLF SPKQVGFKAS TPRNKHLKSF EPSPNQGISL 780 KSSSSIQSAS FSSPSLSGKK LKIHPVAETC GQRNSSSALP EVTGSSAGTD FTVETFSIFG 840 ETPFKRSIES PSAWKSPWFI NSFIAGPRVD TDITIEDIGY FMSPGDRSYD AIGLMKQISE 900 QTAAAYANAQ EVLGNETPET LLKGKLNRDS QEQEKNKLPS NRSSLPQNVL AECRVLDFSE 960 CGTPGKKAEH GKSSTGNGIS FSSPSSYLLK SCR

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MDSDRTISNP SDGLGDGIQK IRALNGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVNKFGPK KWSTIAQHLP  120
GRIGKQCRER GMDTRRGVGF DSCSSDLWEQ MGRANEILAW EGLPQVGPQN QPIQSSSLRI  180
SGDDSGPKGT EAEEISECSQ DSTVAGRFQS AGEMANVVLY TREELQSAEV SGSGKEPNSS  240
PASCSEPYYP SMEDPSFSMT EMSHGIDCTT KYLQQSFSHD AEATMSGDYH FDLHDIPNTS  300
SIPLERESSG MQSYCLGTNE SHEVAGIPLQ TSGGFTTSSS MGNMHMGSDK PEHMLISDDE  360
CCRVLFSEAM NDECFSSRNL DLGGCSGQIL CQSSNVQISG AGGSIPSQLH RPSSSDVTGT  420
SCSQSFFSSL VSADDVPLIF GGDPNSLFVV QEQEYATCSR DGFIYTNDSA NSPCNDGIDM  480
TGLQEQLDIL KNPSKLVAVN NFGSSSDTQT CTLDARPNVD KNEQDAGALC YEPPRFPSFD  540
GPFFSCDLIQ SGSEMQQEYS PLGIRQLMMP SMNCLTPFRL WDSPTRDSSP DAVLKSAAKT  600
FTGTPSILKK RHRELLSPLS DRRKDKKLET DMTTSLTREF SRLDVVVDDS RGHKASLQFP  660
SPNRSRNSAE PSEDKENQVC SERDSEKVSS NTAFSDDRNT GKVFCDSELQ ENTKQGASEV  720
EDKTKIDIDS TSQPPFGILL EHNMNDLQLF SPKQVGFKAS TPRNKHLKSF EPSPNQGISL  780
KSSSSIQSAS FSSPSLSGKK LKIHPVAETC GQRNSSSALP EVTGSSAGTD FTVETFSIFG  840
ETPFKRSIES PSAWKSPWFI NSFIAGPRVD TDITIEDIGY FMSPGDRSYD AIGLMKQISE  900
QTAAAYANAQ EVLGNETPET LLKGKLNRDS QEQEKNKLPS NRSSLPQNVL AECRVLDFSE  960
CGTPGKKAEH GKSSTGNGIS FSSPSSYLLK SCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	621	628	DRRKDKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-151	MYB family protein