PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO03513.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 325aa    MW: 36800.4 Da    PI: 6.6775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO03513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-211053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                + en+  rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+tgk
  POO03513.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIEIILLMFSPTGK 53
                6799**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IEIILLMFSP TGKPSLCSGK  60
RSIEEVIAKF AQLTPQERAK RKLESLEELS NQAMLFQTQL SEIHKRLSYW TNPDKIDSVE  120
HLGQMENSLR ESINQIRSHK EILQKQQFMS LDCSTQFQNG IHIPFRVGAE QQLQPLSWIP  180
NNDGQNIVLP DDPSLLSHRE MECSTSSSFG SYSGYFGMGR NPEISNSGQE NGMVSDLSRT  240
TPVSLQLGGG QFPYVPYNLN VLNDPKFQPQ TEINPQENAV DYHVNGNFEV PRHGYETNHQ  300
DNWASTSGTY AVSMLDETLY PQHPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-84M-type_MADS family protein