PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02800.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HSF
Protein Properties Length: 299aa    MW: 33006.5 Da    PI: 5.0349
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.54e-37101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++++isw+eng++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+kell++i+
    POO02800.1  10 FLTKTYQLVDDPVTNDVISWNENGTAFVVWKTADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFRRGQKELLSEIR 97 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    POO02800.1  98 RRKT 101
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MAQRSVPAPF LTKTYQLVDD PVTNDVISWN ENGTAFVVWK TADFARDLLP KYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANENFRRGQK ELLSEIRRRK TVTTAAATTS PAQVSTGGKS  120
GGEGSSTPSN SGEDLGSTST SSPDSKSPGS VETAAMTQFA DLSGENEKLK KDNEVLTSEL  180
AQTKRQCDEL IAFLTEYMKV GPDQINRIMR QGSCRSINGG LVGDEGDDRD DDDDDENEVQ  240
EEKGEEEGLK LFGVWVKGNE NKNKRTRNDG TGLTGPDPKK MKGVDFHAPP LMKSSKVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-81HSF family protein