PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02579.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 604aa    MW: 66351.4 Da    PI: 6.3661
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.82.4e-872376032374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                 +e L+++A++++s+dl+ aq +L rl+++  ++p+g+    p+qR+a yf+eAL++ l++      +  +++ +s+ + ++++  +k+fs +sPi+ fs
  POO02579.1 237 IEDLIRVADCFDSDDLQFAQVILDRLNNRlrSTPSGKpvgkPLQRAAIYFKEALQSFLSG------SNRTARLSSWAEIVQTIRGYKAFSGISPIPMFS 329
                 678************************998777776555559******************......5666777777789******************** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 h+t+Nqa+lea++g+  +H+iDfdi+ G+Q+++L+++La+++     + p lR+T+++++e   + e + ++e+L++fA+el+++f+ ++++++++e++
  POO02579.1 330 HFTTNQALLEALAGSAFIHVIDFDIGLGGQYASLMRELAEKSdslrVNLPILRVTALVAEE--YAVESRLIRENLTQFAQELKIRFQVEFILVRTFEAM 426
                 *****************************************97666679**********66..99999******************************* PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleaklpreseerikv 285
                 ++++ +++ gE++aV ++ ++ r l            +L  v++lsP v v+v+ e    +++++sF ++f+  le+ys++++sl+a +    e+ +k+
  POO02579.1 427 SFKAVNFRDGEKTAVLFSSAVLRRL---------GGGFLGDVRRLSPAVAVFVDGEgfgGETGATSFRRGFVCGLEFYSMVMESLDAAM-VGPEWVRKI 515
                 ******************9999998.........358*******************877788999********************8885.5679999** PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 E+ +l+++i  ++ ++ a+ +   +++++ re+++ aG++pv+ls++a  qa++ll kv+++g++v +++++lvl+W++r+Lv++S+Wr
  POO02579.1 516 EAYVLKPRIAAAIEAAAAA-VGGGRRAASFREMFHGAGLRPVQLSQFADFQAECLLGKVQVRGFHVAKRQAELVLCWHERALVATSVWR 603
                 ****************999.999999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    
MIVPVTAPQN NLIQSPNLKS DNNNNNNNNN NNNNNNNNNN NNNNNNSSSN IGFHSPAHIP  60
NLCYEPTSVL DLRRSPSPVA GKPAKVSAVS DVVLAQTTND PLEWDDQVLH NLDNWDTIMR  120
DLGLHDDSAP AFTTASTTTT TTGHVVPHLN TCDPQIPHFS EFTHPQPFDP THLVHSADFT  180
LSELSSNHST STSSFGSQNL NLFEVSPDFH LGGNNNNNNN STTTTNNNSC NIGFDFIEDL  240
IRVADCFDSD DLQFAQVILD RLNNRLRSTP SGKPVGKPLQ RAAIYFKEAL QSFLSGSNRT  300
ARLSSWAEIV QTIRGYKAFS GISPIPMFSH FTTNQALLEA LAGSAFIHVI DFDIGLGGQY  360
ASLMRELAEK SDSLRVNLPI LRVTALVAEE YAVESRLIRE NLTQFAQELK IRFQVEFILV  420
RTFEAMSFKA VNFRDGEKTA VLFSSAVLRR LGGGFLGDVR RLSPAVAVFV DGEGFGGETG  480
ATSFRRGFVC GLEFYSMVME SLDAAMVGPE WVRKIEAYVL KPRIAAAIEA AAAAVGGGRR  540
AASFREMFHG AGLRPVQLSQ FADFQAECLL GKVQVRGFHV AKRQAELVLC WHERALVATS  600
VWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-158GRAS family protein