PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02113.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CPP

Protein Properties

Length: 801aa MW: 87464.4 Da PI: 6.0416

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.9	6.4e-16	506	543	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk POO02113.1 506 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 543 89**********************************96 PP
2	TCR	50.5	4.1e-16	590	628	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN POO02113.1 590 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 628 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MDMDTPKKNQ IGTPVSKFED SPVFNYINSL SPIKPVKSLH ITQTFSSLSF GSLPSVFTSP 60 HVSSHKESRF LRRYSCADPS KPELSSENGN KATTSEGIVM DTAQLYSNSS ELHENGKSEA 120 NIGEASVEPQ NEGSTFVIEL PRVLKYDCGS PDCVSMPCGV EADFATDSAD PSTSLVPHVP 180 DVPEMNSSDN EAQFQELCLS EQRKQGTVCD WESLISDAAD ILIFNSPNGT EAFKGLIQNS 240 LEPVTRFCTS FAAEFSHNEI NNEHQMQIVD PVSSEQHNGE EPFSQTGDAS SLEDVEQTQD 300 RFADTNSNRG MASNQSEIKD NEDKTCVAFA CKSVFSLHRG MRRRCLDFEA AGARRKNLED 360 GSNNSSVSSQ HDEDITANEK QPGFIRPCGE SSSRRMLPGI GLHLNALATT SKDCKITKNE 420 NLSSGIQIRL PGSTVSIHSP TAGQEGLDKS LIPISSEIDN NTPENGVQLL QDASQAPGSL 480 TNEEFNQNSP KKKRRRLDNA GETEGCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCQECF 540 NKPIHEDTVL ATRKQIESRN PLAFAPKVIR SSDSVPEFGD ESSKTPASAR HKRGCNCKKS 600 SCLKKYCECY QGGVGCSISC RCEGCKNAFG RKDGSVLTGT EEQDEEETEA CEKSLVDKPL 660 QKIEIQNNEE QNPGSSLPIT PLRISRPLLP IPFSSKGKPP RSSFLTGTSS SGLYSQKHGK 720 PSILRSQPKF EKHVQTIPDD EMPEILRGDG SPTTGIKTAS PNSKRISPPH CHFGSSSPGR 780 RSGRKLILQS IPSFPSLTPQ H

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MDMDTPKKNQ IGTPVSKFED SPVFNYINSL SPIKPVKSLH ITQTFSSLSF GSLPSVFTSP  60
HVSSHKESRF LRRYSCADPS KPELSSENGN KATTSEGIVM DTAQLYSNSS ELHENGKSEA  120
NIGEASVEPQ NEGSTFVIEL PRVLKYDCGS PDCVSMPCGV EADFATDSAD PSTSLVPHVP  180
DVPEMNSSDN EAQFQELCLS EQRKQGTVCD WESLISDAAD ILIFNSPNGT EAFKGLIQNS  240
LEPVTRFCTS FAAEFSHNEI NNEHQMQIVD PVSSEQHNGE EPFSQTGDAS SLEDVEQTQD  300
RFADTNSNRG MASNQSEIKD NEDKTCVAFA CKSVFSLHRG MRRRCLDFEA AGARRKNLED  360
GSNNSSVSSQ HDEDITANEK QPGFIRPCGE SSSRRMLPGI GLHLNALATT SKDCKITKNE  420
NLSSGIQIRL PGSTVSIHSP TAGQEGLDKS LIPISSEIDN NTPENGVQLL QDASQAPGSL  480
TNEEFNQNSP KKKRRRLDNA GETEGCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCQECF  540
NKPIHEDTVL ATRKQIESRN PLAFAPKVIR SSDSVPEFGD ESSKTPASAR HKRGCNCKKS  600
SCLKKYCECY QGGVGCSISC RCEGCKNAFG RKDGSVLTGT EEQDEEETEA CEKSLVDKPL  660
QKIEIQNNEE QNPGSSLPIT PLRISRPLLP IPFSSKGKPP RSSFLTGTSS SGLYSQKHGK  720
PSILRSQPKF EKHVQTIPDD EMPEILRGDG SPTTGIKTAS PNSKRISPPH CHFGSSSPGR  780
RSGRKLILQS IPSFPSLTPQ H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	490	497	PKKKRRRL
2	491	496	KKKRRR
3	493	497	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-157	CPP family protein