PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02086.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HSF

Protein Properties

Length: 430aa MW: 49185.4 Da PI: 4.7014

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.6	3.5e-32	43	170	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........................ CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........................ 74 Fl+k+yei+ed+++++++sws+ +nsfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+Y +v + k++ + POO02086.1 43 FLNKTYEIVEDPATNDVVSWSRGNNSFVVWDPQNFAMTLLPRYFKHNNFSSFVRQLNTYLIAMVLYNLKHNLKlceaaqylciqlveyafkieikgf 139 9*************************************************************9999887779999**99999998888776 PP ...XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ...kekiweFkhksFkkgkkellekikrkks 102 +++ weF+++ F +g+k+ll++i+r+k POO02086.1 140 rkvDPDRWEFANEGFLRGQKNLLRNIRRRKG 170 65449*********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MSMNRHQGRR VKEEFIAGAG AAAAADPAPQ PMEALHDAGP PPFLNKTYEI VEDPATNDVV 60 SWSRGNNSFV VWDPQNFAMT LLPRYFKHNN FSSFVRQLNT YLIAMVLYNL KHNLKLCEAA 120 QYLCIQLVEY AFKIEIKGFR KVDPDRWEFA NEGFLRGQKN LLRNIRRRKG VQPPQSSSHQ 180 ASFDPCVEVG RFGLDGEVDR LKRDKQVLMV ELVKLRQQQQ NTKTHLQTME DRLKRTELKQ 240 QQMMNFLARA MQNPNFVQQL VQQKNRRKEL EEAICKKRRR RPIEQGQPSD NVNVDDQVDD 300 HDVIVDGIGQ ISGVSSSSAG IFVKMEPQDY SNMSEFDVEE LDELAIDMES LSGVSQKMIN 360 TEAEVPVQVD QIGEEQGSST DKDLIDEGFW KNLLNESMEE GINMDINEEE DEEDVDVLVE 420 QLGYLASSPK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MSMNRHQGRR VKEEFIAGAG AAAAADPAPQ PMEALHDAGP PPFLNKTYEI VEDPATNDVV  60
SWSRGNNSFV VWDPQNFAMT LLPRYFKHNN FSSFVRQLNT YLIAMVLYNL KHNLKLCEAA  120
QYLCIQLVEY AFKIEIKGFR KVDPDRWEFA NEGFLRGQKN LLRNIRRRKG VQPPQSSSHQ  180
ASFDPCVEVG RFGLDGEVDR LKRDKQVLMV ELVKLRQQQQ NTKTHLQTME DRLKRTELKQ  240
QQMMNFLARA MQNPNFVQQL VQQKNRRKEL EEAICKKRRR RPIEQGQPSD NVNVDDQVDD  300
HDVIVDGIGQ ISGVSSSSAG IFVKMEPQDY SNMSEFDVEE LDELAIDMES LSGVSQKMIN  360
TEAEVPVQVD QIGEEQGSST DKDLIDEGFW KNLLNESMEE GINMDINEEE DEEDVDVLVE  420
QLGYLASSPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	281	RRKELEEAICKKRRRR
2	276	281	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-114	HSF family protein