PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01947.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 442aa MW: 48088.9 Da PI: 8.3987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.3	4.2e-16	241	286	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L +++eY+k+Lq POO01947.1 241 HNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 286 9**********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MSHCVVPSWN LRHQRQEQVE GEEGNRSSHV QNYSSTSTSS HLVPVSNYEV KELTWENGQL 60 AMHGLGGLLP SGPTKPTWGS RTGETLESIV RQATCHNQDP YVTTYHGKTP ATVSSNIFAS 120 SCGKQAENSG RAPLATSVMK KRSRSINSDH DGKNFSSNCS IQEEQGGPSA CASASATFCR 180 ESDTTMMTWA SFESPQSLKN KSTDEDSACH DGLENQDEDR ETKGESGRSN STRRSRAAAI 240 HNQSERRRRD RINQKMKALQ KLVPNASKTD KASMLDEVIE YLKQLQAQVQ LMSSVRNMSP 300 QMVMPLGMQQ QLQMSMLARM GMGVGVGMGM GMLDMSSMAR ATPQSFPTLI HPAVASPTFV 360 PPQFMVQPMI PAQAAKPGPA GTSSSSAPLP DPYCALLAQS MNMELYNKMA AFYSQQVNQA 420 RQAAGSPSLS SHVQENSRQS AS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MSHCVVPSWN LRHQRQEQVE GEEGNRSSHV QNYSSTSTSS HLVPVSNYEV KELTWENGQL  60
AMHGLGGLLP SGPTKPTWGS RTGETLESIV RQATCHNQDP YVTTYHGKTP ATVSSNIFAS  120
SCGKQAENSG RAPLATSVMK KRSRSINSDH DGKNFSSNCS IQEEQGGPSA CASASATFCR  180
ESDTTMMTWA SFESPQSLKN KSTDEDSACH DGLENQDEDR ETKGESGRSN STRRSRAAAI  240
HNQSERRRRD RINQKMKALQ KLVPNASKTD KASMLDEVIE YLKQLQAQVQ LMSSVRNMSP  300
QMVMPLGMQQ QLQMSMLARM GMGVGVGMGM GMLDMSSMAR ATPQSFPTLI HPAVASPTFV  360
PPQFMVQPMI PAQAAKPGPA GTSSSSAPLP DPYCALLAQS MNMELYNKMA AFYSQQVNQA  420
RQAAGSPSLS SHVQENSRQS AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	250	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	8e-41	bHLH family protein