PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01864.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 548aa MW: 58653.3 Da PI: 6.9802

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.6e-19	167	253	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++++ ++l+rg+l++ +Weev++++ r + ++s +qCk+k +nl+kryk ++++++++ s s++p+f+++e POO01864.1 167 EWSDAAISCLLDAYTDKFTQLNRGNLRGRDWEEVAAVVseRCERQTKSVEQCKNKVDNLKKRYKLERHRMNNG-GISASHWPWFKKME 253 5***********************************665667789******************9999.566679*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MASCDDDFSL LGDESNNPSN PHNLSHAPAS HHLHQTYAPA PAHRFSAPAR AAPTQPILSA 60 GSPEKVGAGE DQDDGEDYGE AAAAAFCSNP FENDGDQSGG GGGGGGGGVD SRSEKRKDHG 120 REDQLSDGGG SGGPYYYKKP KSTQAGASGN SGGGSGSGGE YRKDREEWSD AAISCLLDAY 180 TDKFTQLNRG NLRGRDWEEV AAVVSERCER QTKSVEQCKN KVDNLKKRYK LERHRMNNGG 240 ISASHWPWFK KMEQIVGNNL PIKVASDDDK GAGSSGNTPR QSKRYAMTTG SSAGQMNNMK 300 PKSTTNPKWR RVVFKISGAA LAGAAPNNID SKVVMLIARE VAMAARVGVE VAVVVGGRNF 360 FCGDTWVNTT GLDRATAYQI GMMATVMNSV LLQSAIEKMG VQTRVQTAFS MHEVAEPYNR 420 QRAIRHLEKG RVVIFAGIGA ATGNPLFSTD TAAAFRALEI HAEAVLKGTN VDGVYDCTSQ 480 DNNFTFEHIS FRELVARGAT LMDSMALTYC EENRIPVVVF NLLEPGNISK ALCGEQVGTL 540 IDLTGRVS

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MASCDDDFSL LGDESNNPSN PHNLSHAPAS HHLHQTYAPA PAHRFSAPAR AAPTQPILSA  60
GSPEKVGAGE DQDDGEDYGE AAAAAFCSNP FENDGDQSGG GGGGGGGGVD SRSEKRKDHG  120
REDQLSDGGG SGGPYYYKKP KSTQAGASGN SGGGSGSGGE YRKDREEWSD AAISCLLDAY  180
TDKFTQLNRG NLRGRDWEEV AAVVSERCER QTKSVEQCKN KVDNLKKRYK LERHRMNNGG  240
ISASHWPWFK KMEQIVGNNL PIKVASDDDK GAGSSGNTPR QSKRYAMTTG SSAGQMNNMK  300
PKSTTNPKWR RVVFKISGAA LAGAAPNNID SKVVMLIARE VAMAARVGVE VAVVVGGRNF  360
FCGDTWVNTT GLDRATAYQI GMMATVMNSV LLQSAIEKMG VQTRVQTAFS MHEVAEPYNR  420
QRAIRHLEKG RVVIFAGIGA ATGNPLFSTD TAAAFRALEI HAEAVLKGTN VDGVYDCTSQ  480
DNNFTFEHIS FRELVARGAT LMDSMALTYC EENRIPVVVF NLLEPGNISK ALCGEQVGTL  540
IDLTGRVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein