PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01861.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 444aa MW: 50325.2 Da PI: 7.2958

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.7	7.4e-24	94	194	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d POO01861.1 94 KWTDTMVRLLIMAVFYIGDENGSEGtdpttkkkhpggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLDT 192 7************988777754335667788999999******************************************559*******99 PP trihelix 85 le 86 ++ POO01861.1 193 MD 194 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MGGGMLGLEL PLQQQQNPSN PPNPHHLSHP QMVAYAHHEP DHHPQAQPSV KHGYPFAPKS 60 KPVLALSDED EPGFAAEDTS GDGKRKMSPW QRMKWTDTMV RLLIMAVFYI GDENGSEGTD 120 PTTKKKHPGG LLQKKGKWKS VSRAMMEKGF YVSPQQCEDK FNDLNKRYKR VNDILGKGTA 180 CRVVENQSLL DTMDLAPKMK EEVRKLLNSK HLFFREMCAY HNSCGHGSVS TTGGASGAHH 240 SPELASSEPS SHVQPNQQNQ QQRCLHSTDN SHVDYDDDED GDEAEGGSRG HIGHGHDDIE 300 DESYEGPRKR PRKGALSDSS QLIQQLSCEI LGVIQDGSKS SWEKKHWLKT RLIQLEEQQV 360 GFQCEAFELE KQRLKWVKFS SKKEREMERA KFENEKRRLE NERMVLLIRQ KELEVLDLHH 420 RSQHQQQQQH SSNKRGGDPS SVTG

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MGGGMLGLEL PLQQQQNPSN PPNPHHLSHP QMVAYAHHEP DHHPQAQPSV KHGYPFAPKS  60
KPVLALSDED EPGFAAEDTS GDGKRKMSPW QRMKWTDTMV RLLIMAVFYI GDENGSEGTD  120
PTTKKKHPGG LLQKKGKWKS VSRAMMEKGF YVSPQQCEDK FNDLNKRYKR VNDILGKGTA  180
CRVVENQSLL DTMDLAPKMK EEVRKLLNSK HLFFREMCAY HNSCGHGSVS TTGGASGAHH  240
SPELASSEPS SHVQPNQQNQ QQRCLHSTDN SHVDYDDDED GDEAEGGSRG HIGHGHDDIE  300
DESYEGPRKR PRKGALSDSS QLIQQLSCEI LGVIQDGSKS SWEKKHWLKT RLIQLEEQQV  360
GFQCEAFELE KQRLKWVKFS SKKEREMERA KFENEKRRLE NERMVLLIRQ KELEVLDLHH  420
RSQHQQQQQH SSNKRGGDPS SVTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-73	Trihelix family protein