PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01672.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 702aa MW: 76863.9 Da PI: 6.724

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ l POO01672.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDL 215 89**************************996555555..89*******************************************..4488999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ POO01672.1 216 CVGIRRA 222 **997 PP
2	Auxin_resp	116.3	2.6e-38	290	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ POO01672.1 290 AATLASNGQPFEVVYYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPDSPWRLLQ 373 6899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MITFMDSKEK MKEVEKCLDP QLWHACAGGM VQMPAVNAKV FYFPQGHAEH ACGPVDFRNS 60 PRVAPYVLCR VSSIKFMADP ETDEVFAKLR LAPLGGNELG YEDDGIGRLN GSETQEKPAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPAG 240 GNCAVPYAGF SAFLRDEENK LLRNGNGNGS SLNGGLMGKG KVRPESVVEA ATLASNGQPF 300 EVVYYPRAST PEFCVKAALV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD 360 PLRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS 420 DFPLDGHIPI PTFPSNLLGH SNPFGCLSDN TPAGMQGARH AHFGLSLSDL HLNKLQPGLF 480 PVGFPPFDHG TAPTKFSNNA MNQKPSLNEN VSCLLTMSHA TQTPKKPDDV KAPQLILFGQ 540 PILTEQQISF MSCSGDTVSP VLTGNSSSDG NGDKAANFSD GSGSAIHQQG LQERSSAEGY 600 QWCKDNRQET EPNLETGHCK VFMESEDVGR TLDLSLLGSY DELYRKLADM FGIENSETLS 660 QALYRDGTGA VKHIGEEPFS DFTKTARRLT ILMDSGSDNV GM

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MITFMDSKEK MKEVEKCLDP QLWHACAGGM VQMPAVNAKV FYFPQGHAEH ACGPVDFRNS  60
PRVAPYVLCR VSSIKFMADP ETDEVFAKLR LAPLGGNELG YEDDGIGRLN GSETQEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPAG  240
GNCAVPYAGF SAFLRDEENK LLRNGNGNGS SLNGGLMGKG KVRPESVVEA ATLASNGQPF  300
EVVYYPRAST PEFCVKAALV KAALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVQVAD  360
PLRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPQHS  420
DFPLDGHIPI PTFPSNLLGH SNPFGCLSDN TPAGMQGARH AHFGLSLSDL HLNKLQPGLF  480
PVGFPPFDHG TAPTKFSNNA MNQKPSLNEN VSCLLTMSHA TQTPKKPDDV KAPQLILFGQ  540
PILTEQQISF MSCSGDTVSP VLTGNSSSDG NGDKAANFSD GSGSAIHQQG LQERSSAEGY  600
QWCKDNRQET EPNLETGHCK VFMESEDVGR TLDLSLLGSY DELYRKLADM FGIENSETLS  660
QALYRDGTGA VKHIGEEPFS DFTKTARRLT ILMDSGSDNV GM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein