PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01535.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18852.1 Da    PI: 4.4282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72e-20953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                ++ienk  r v+fskRrng++KKA+ELS L++a+ a++++s++g+
  POO01535.1  9 EKIENKEHRLVSFSKRRNGLFKKAHELSSLTGAQTAILVLSESGR 53
                57*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MVKRRINIEK IENKEHRLVS FSKRRNGLFK KAHELSSLTG AQTAILVLSE SGRPYFHASP  60
PSFITQLLNP ESSSSSPESA VESESESWLR YLLDFEVEGC EEVDELVAVK EKLEEMRERA  120
TMALDLNFAN SLLSASGDLD DDDSLPSNVD DSMLHDWIGR FEGCISSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.22e-16MIKC_MADS family protein