PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01508.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YC
Protein Properties Length: 269aa    MW: 29805.9 Da    PI: 4.6269
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC262e-083584398
       NF-YC 43 aPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                +P l+ska elf+ +l  r++  + +   +t++   ++++v   ++fdfl div +
  POO01508.1  3 VPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCVHTFNVFDFLKDIVSK 58
                89***************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MAVPLLVSKA LELFLQDLCD RTYEITLKRG AKTMNSLHLK QCVHTFNVFD FLKDIVSKVP  60
DLGGSDTAGE DRSVAKRRKV NDGEDNASDE ESKKSKLHEA GNHSVGSGRG RGRGRGRPRG  120
RGSRVMERET AAHQDKFEDD PDISKYNDND DQNLETLDDR AEPEGPKVNV AGDKNAEGPV  180
RNFDLNVDLN ENGDLTTLST PVPVPTLTPP PLPAGLSAKT IPEMKHEEYS YPHPGWSLAD  240
VEKMAIDPIQ LANLNRRMDE DDEDYDEEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109119RGRGRGRGRPR
2111121RGRGRGRGRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-44NF-YC family protein