PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | POO01421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20121.7 Da PI: 8.7892 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.1 | 7.1e-11 | 5 | 42 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R++++ KKA EL LC+ ev+++ + ++g+l ++ POO01421.1 5 FERRKATLKKKAGELGRLCNSEVCIVCYDPNGRLDVWP 42 779*******************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MDKIFERRKA TLKKKAGELG RLCNSEVCIV CYDPNGRLDV WPDDSARAQS IISKYYYSRS 60 ETSSNHHNSN TTSNKRKREK LINLSDMLEK KMRKLEDDLD HQVISRNLEG QNHHEIKNRY 120 PLPLGTSLWD EELDALSQDS LRGFSDYLES KIQGLNDKIA PFPNVLKNIR LRD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 81 | NKRKREKL |
2 | 75 | 94 | KRKREKLINLSDMLEKKMRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-10 | M-type_MADS family protein |