PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | POO01317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C3H | ||||||||
Protein Properties | Length: 600aa MW: 63786.7 Da PI: 8.4218 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3.1e-08 | 57 | 82 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ POO01317.1 57 KTRLCNKYNSAEGCKFGDKCHFAHGE 82 8***********************96 PP | |||||||
2 | zf-CCCH | 31.6 | 2.7e-10 | 220 | 244 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C +f + G C +GdrC+FaHg POO01317.1 220 FKTKICENFTK-GSCAFGDRCHFAHG 244 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence |
TSGCPFGEGC HFSHYVPGGF QAVSQMINIG GSPALPPVRN PAVPPSFPDG SSPPAVKTRL 60 CNKYNSAEGC KFGDKCHFAH GEWELGRPTA PSYEDQRTLG PFPSRLGGRI EPPPHSHALA 120 ASFGASSTAK ISVDASLSGA IIGKHGVNSK QICRVTGAKL YVRDHESDPN VKYIELEGTF 180 DQINQASAMV RELILNVGSA KEKHGKTFLG TGHPGTAGNF KTKICENFTK GSCAFGDRCH 240 FAHGAEELRK FHCFALAPPP PPPPPLLLPK LIHLFKMATT TAAAFSLQMA TARPCISSSR 300 GAWKAGPAML QSGYKGASWA KLSSACHISS SAQLFGRSFT SSSIKFDKAV VKAMSETSEN 360 KHVAGLPINL KGKRAFIAGV ADDNGYGWAI AKALAAAGAE ILVGTWVPAL NIFESSLRRG 420 KFDESRMLPD GSLMEITKVY PLDAVFDNPE DVPEDIKANK RYAGSSNWTV QEVAETVKND 480 FGSIDILVHS LANGPEVLAF EAGRKHKVRV NTISAGPLRS RAAKAIGFID MMIDYSIANA 540 PLQKELSAEE VGNAAAFLAS PLASAITGAV IYVDNGLHAM GVGVDSPIFK DLDIPKDEHH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-57 | C3H family protein |