PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01230.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 708aa MW: 77606.6 Da PI: 7.8737

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.8	8.8e-23	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++i+r++++r++lt+GW++Fv++++L +gD++vF +++++ POO01230.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfpsldysADPPVQ--TVIAKDVHGEIWKFRHIFRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RTKTGDI 206 89**************************996555555..8********************************************..4588889 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ POO01230.1 207 CVGIRRA 213 **996 PP
2	Auxin_resp	113.6	1.8e-37	274	357	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa +a+++++Fev+Y+Pr st+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++ + +dp+rWp+S+Wr+L+ POO01230.1 274 AAARAANGQPFEVIYYPRLSTPEFCVKASAVKAAMRIQWCSGMRFKMAFETEDSSRISWfMGTIASAQVADPIRWPHSPWRLLQ 357 67899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MKEVEKNLDP QLWQACAGGM VNIPPVNSRV FYFPQGHAEH AQAHVDFALA SLRIPAFVLC 60 RVSAVKFMAD PDTDEVFAKI RLVPLGNNEL DFEDDGVVGS DGSENPEKPT SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPS LDYSADPPVQ TVIAKDVHGE IWKFRHIFRG TPRRHLLTTG 180 WSNFVNQKKL VAGDSIVFLR TKTGDICVGI RRAKRGNCGP ETPSGWNNGS SYGGFSVFMR 240 EDENKMARNG CGSSSPGSNM RGTRKVRPEA VVEAAARAAN GQPFEVIYYP RLSTPEFCVK 300 ASAVKAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTIASA QVADPIRWPH SPWRLLQVTW 360 DEPDLLQNVK RVSPWLIESV SNMPIIHLSS FSPPRKKLRF PQHPDFTLDS QFPVSSFLGN 420 PLGPSSPLCC LPDNTPAGIQ GARHALFGIS LSDLHLNNKL QPGLFSSSFE QLNPHSGIPN 480 GLKRGHSNSN ESLSCLLTMG NSSPNMEKFD SVKGHQFVLF GQRILTEQQI SRSCSSDSVS 540 QVSNGKNSAD GNPDKAKFLS NGSGSTLEQQ VSPEKSSNTG FSWHQGLKAN EFGLDTGHCK 600 VFMDSEDVGR TLDLSVLGSY EELYGRLANM FGIERSEMLT HVLYHDASGA LKQTGDEPFS 660 DFMKTAKRLT ILTDSGSKNM GRTWITGMRN AENGLGASNK TGPLSIFA

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MKEVEKNLDP QLWQACAGGM VNIPPVNSRV FYFPQGHAEH AQAHVDFALA SLRIPAFVLC  60
RVSAVKFMAD PDTDEVFAKI RLVPLGNNEL DFEDDGVVGS DGSENPEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPS LDYSADPPVQ TVIAKDVHGE IWKFRHIFRG TPRRHLLTTG  180
WSNFVNQKKL VAGDSIVFLR TKTGDICVGI RRAKRGNCGP ETPSGWNNGS SYGGFSVFMR  240
EDENKMARNG CGSSSPGSNM RGTRKVRPEA VVEAAARAAN GQPFEVIYYP RLSTPEFCVK  300
ASAVKAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTIASA QVADPIRWPH SPWRLLQVTW  360
DEPDLLQNVK RVSPWLIESV SNMPIIHLSS FSPPRKKLRF PQHPDFTLDS QFPVSSFLGN  420
PLGPSSPLCC LPDNTPAGIQ GARHALFGIS LSDLHLNNKL QPGLFSSSFE QLNPHSGIPN  480
GLKRGHSNSN ESLSCLLTMG NSSPNMEKFD SVKGHQFVLF GQRILTEQQI SRSCSSDSVS  540
QVSNGKNSAD GNPDKAKFLS NGSGSTLEQQ VSPEKSSNTG FSWHQGLKAN EFGLDTGHCK  600
VFMDSEDVGR TLDLSVLGSY EELYGRLANM FGIERSEMLT HVLYHDASGA LKQTGDEPFS  660
DFMKTAKRLT ILTDSGSKNM GRTWITGMRN AENGLGASNK TGPLSIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein