PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01195.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 579aa MW: 65392.2 Da PI: 5.0449

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.5e-10	456	504	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eE +lv++v q G g W+ I r + +Rt ++k++w+++l POO01195.1 456 SWTPEEVVKLVEGVSQCGVGKWTEIKRLLFsssSHRTSVDLKDKWRNLL 504 5**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MFSCKPYEVD SDMPIFPVSE DEPLGLEHFL VEPLHKEDWV GDLLDLDAFQ IEKCFNIEDI 60 SGTFDYDQIK PDAGREERSE WHGVVIPFTS TDTAYPKLTK GEGENPKMSS EKSQGINISV 120 HEEYPTDTKC TDEACNLDFS TCKESCLGNG GLENQFQGSL KGDSGDAMVD LTSTNIPMLK 180 YTNNHRSSFL DQVAAKELHE AFKNMSGQES FVTDKNWPKK DDLYGFENYA ELDSMKLLKV 240 DANSIVKEGE TSFSSLVEYS GGVTGLVTGA LNNERMSQNQ KRKRVDGCES LKTTSDFKVE 300 ISSLDEGDKA GLLVSPKRSR KPPRRYIEES LDYETKSHNR KCGIGRKSKD RNLHDRYQKY 360 NWQQEFQAEE LVYEDDSFNG GCIQVPFGLP MEKDHPKKNK LSPGFEDSKD NGLLDPKEKL 420 DIEPLLVESQ EDISEDECFV RSHTLKGNGR RKRHISWTPE EVVKLVEGVS QCGVGKWTEI 480 KRLLFSSSSH RTSVDLKDKW RNLLRASCTQ LQIKEKVEQN RKQTSSNYVP ESILCRVREL 540 AVIYPYPRDS RSKVSCTVPA VSSFPASTPS ALVPLPTAV

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MFSCKPYEVD SDMPIFPVSE DEPLGLEHFL VEPLHKEDWV GDLLDLDAFQ IEKCFNIEDI  60
SGTFDYDQIK PDAGREERSE WHGVVIPFTS TDTAYPKLTK GEGENPKMSS EKSQGINISV  120
HEEYPTDTKC TDEACNLDFS TCKESCLGNG GLENQFQGSL KGDSGDAMVD LTSTNIPMLK  180
YTNNHRSSFL DQVAAKELHE AFKNMSGQES FVTDKNWPKK DDLYGFENYA ELDSMKLLKV  240
DANSIVKEGE TSFSSLVEYS GGVTGLVTGA LNNERMSQNQ KRKRVDGCES LKTTSDFKVE  300
ISSLDEGDKA GLLVSPKRSR KPPRRYIEES LDYETKSHNR KCGIGRKSKD RNLHDRYQKY  360
NWQQEFQAEE LVYEDDSFNG GCIQVPFGLP MEKDHPKKNK LSPGFEDSKD NGLLDPKEKL  420
DIEPLLVESQ EDISEDECFV RSHTLKGNGR RKRHISWTPE EVVKLVEGVS QCGVGKWTEI  480
KRLLFSSSSH RTSVDLKDKW RNLLRASCTQ LQIKEKVEQN RKQTSSNYVP ESILCRVREL  540
AVIYPYPRDS RSKVSCTVPA VSSFPASTPS ALVPLPTAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-26	MYB_related family protein