PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01180.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 787aa MW: 90344.7 Da PI: 6.8981

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.7e-08	571	602	3	35
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgR 35 +WT+eE e +++++k++G++ Wk+ +++++k+R POO01180.1 571 KWTAEEYEYILKYHKEHGSE-WKKLSKHLNKHR 602 8*****************.******9544 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MGEKMREKKG HESEKHREKT IEVEKGEKEL EKVKKKKNKV VDNDGKTSNV VEALKTTCVE 60 REEGTNVDAN GGKDFDSLEE KKENEKMYTE EKKNKKNKKE GVDGISSLGE NFEDDKMFEL 120 VKGQGYNKYC QESPVVDSEV EQAEKEKKKE EEEEKVVDKI SLLGENVEAE KMNELVKGQG 180 NNNNGLDIPV VNSEAEHDEK KKKKKKKKKD GADSISSLGE DVEDDKMNDL VKGREYKKNS 240 QDIPVVNSKI EEAGKKKKRK REKKDGDNVE KNIVTDVQKL SKERNHSDGK INEGSKSAVK 300 EKNTDKVLED NEMGDVAKAQ KGTESGDIAE TKYNKEGDKS KKKKKRKRET ASADVEEIIA 360 NKPGTESTRI RDCENVEYGD NVGSTEDNLH EGCTDVHATD AYEGKKKAQS AKLGKGDDYS 420 KDKKKKAKVE KQVSDGKCHK GKPRTKKDSE TNDSSENPTQ QGKFKRVSFS DRVEVFSSSN 480 GPSWSRKKQV EGLVRGKRFT PEEDEKVKEA VFGYIEERGL GDEGLNMVLN CKQYPEVKNC 540 WKYIGASIPW RPHDSVYYRA HILFERDENR KWTAEEYEYI LKYHKEHGSE WKKLSKHLNK 600 HRIHVKDTFR RIKCTSLNKG RWSQDEYQNL FDLVNKDLRI RASEEKKSKH GMLRDNICWG 660 AISEKLSSRH YAACCMKWYQ QLTSSMVAEG LWVDTDDYRL LDALSDLDAA CIEDVDWDNL 720 LEHRDGDICR KRWNQMVKHI GEYGNKSFSE QVEILSERYS LDVLEAREEY DSKEPVDLIV 780 NNSDDSP

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MGEKMREKKG HESEKHREKT IEVEKGEKEL EKVKKKKNKV VDNDGKTSNV VEALKTTCVE  60
REEGTNVDAN GGKDFDSLEE KKENEKMYTE EKKNKKNKKE GVDGISSLGE NFEDDKMFEL  120
VKGQGYNKYC QESPVVDSEV EQAEKEKKKE EEEEKVVDKI SLLGENVEAE KMNELVKGQG  180
NNNNGLDIPV VNSEAEHDEK KKKKKKKKKD GADSISSLGE DVEDDKMNDL VKGREYKKNS  240
QDIPVVNSKI EEAGKKKKRK REKKDGDNVE KNIVTDVQKL SKERNHSDGK INEGSKSAVK  300
EKNTDKVLED NEMGDVAKAQ KGTESGDIAE TKYNKEGDKS KKKKKRKRET ASADVEEIIA  360
NKPGTESTRI RDCENVEYGD NVGSTEDNLH EGCTDVHATD AYEGKKKAQS AKLGKGDDYS  420
KDKKKKAKVE KQVSDGKCHK GKPRTKKDSE TNDSSENPTQ QGKFKRVSFS DRVEVFSSSN  480
GPSWSRKKQV EGLVRGKRFT PEEDEKVKEA VFGYIEERGL GDEGLNMVLN CKQYPEVKNC  540
WKYIGASIPW RPHDSVYYRA HILFERDENR KWTAEEYEYI LKYHKEHGSE WKKLSKHLNK  600
HRIHVKDTFR RIKCTSLNKG RWSQDEYQNL FDLVNKDLRI RASEEKKSKH GMLRDNICWG  660
AISEKLSSRH YAACCMKWYQ QLTSSMVAEG LWVDTDDYRL LDALSDLDAA CIEDVDWDNL  720
LEHRDGDICR KRWNQMVKHI GEYGNKSFSE QVEILSERYS LDVLEAREEY DSKEPVDLIV  780
NNSDDSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	KKKKKKK
2	200	208	KKKKKKKKK
3	200	209	KKKKKKKKKK
4	201	207	KKKKKKK
5	201	209	KKKKKKKKK
6	202	208	KKKKKKK
7	203	209	KKKKKKK
8	255	261	KKKKKKK
9	255	260	KKKKRK
10	255	263	KKKKRKREK
11	256	264	KKKKKKKKK
12	257	264	KKRKREKK
13	341	347	KKKKKKK
14	342	348	KKKKKKK
15	342	347	KKKKRK
16	405	426	KKKAQSAKLGKGDDYSKDKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-113	MYB_related family protein