PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00575.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

NAC

Protein Properties

Length: 493aa MW: 55104.2 Da PI: 7.1034

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.4	6e-36	50	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + + POO00575.1 50 LPAGVKFDPTDQELI-EHLEAKVEDKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdhlqGGETR 146 799**********.99*****5553344444434666646******.555666799**************756555554433778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l POO00575.1 147 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 ********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MNKSSSSNLG SSISSSDLID AKLEEHQMCG SKHCPGCGHK LEGKPDWLGL PAGVKFDPTD 60 QELIEHLEAK VEDKDMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS 120 KAYTTGTRKR RKIQTECDHL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SDRAASAAVV VGEGISSDGG 240 GRRDSTGSGS CSSKEISSNI ISNPQRDQQQ HHQHQQMVAA AAAVAQMSSA FSGTSMEIPV 300 QLKSDHFSFV PFRKSFDEVG IGDHASTVRE ASGGGGGTCE DHVREHQQQI RPVVHHNIAQ 360 EHHHHQQQQQ QQIHHQMATT SFHISRPSHP ISNIIPPPPL HHTSIILDQD AYHVSRIMLQ 420 NDQNTSTFQQ QQQQQHHKMG GRSASGLEEL IMGCTSSTNN IKEESSIANV PQEADWMKYS 480 PFWPDPDNPD HHG

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MNKSSSSNLG SSISSSDLID AKLEEHQMCG SKHCPGCGHK LEGKPDWLGL PAGVKFDPTD  60
QELIEHLEAK VEDKDMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS  120
KAYTTGTRKR RKIQTECDHL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SDRAASAAVV VGEGISSDGG  240
GRRDSTGSGS CSSKEISSNI ISNPQRDQQQ HHQHQQMVAA AAAVAQMSSA FSGTSMEIPV  300
QLKSDHFSFV PFRKSFDEVG IGDHASTVRE ASGGGGGTCE DHVREHQQQI RPVVHHNIAQ  360
EHHHHQQQQQ QQIHHQMATT SFHISRPSHP ISNIIPPPPL HHTSIILDQD AYHVSRIMLQ  420
NDQNTSTFQQ QQQQQHHKMG GRSASGLEEL IMGCTSSTNN IKEESSIANV PQEADWMKYS  480
PFWPDPDNPD HHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-140	NAC family protein